Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O10
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377...    31   0.59 
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584...    30   0.78 
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    29   1.4  
06_03_0444 + 20864183-20864436,20864831-20865818                       29   1.8  
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897...    29   2.4  
04_04_0889 - 29105506-29106502,29106909-29107069,29107259-291073...    28   3.1  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     27   5.5  
02_04_0174 - 20607745-20608998                                         27   7.3  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    27   9.6  

>01_05_0619 -
           23737178-23737378,23737460-23737516,23737597-23737755,
           23739477-23739621,23739725-23740136,23740693-23740855
          Length = 378

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 25  KREGAGPHNWGTLKDE 72
           KREGAG  NWGT+ DE
Sbjct: 173 KREGAGRGNWGTVTDE 188


>05_06_0189 +
           26257587-26257791,26257962-26258003,26258064-26258436,
           26258515-26258656,26259356-26259514,26259599-26259661,
           26259992-26260180
          Length = 390

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 25  KREGAGPHNWGTLKDEI 75
           KREG+G  NWGT  DEI
Sbjct: 188 KREGSGRGNWGTTTDEI 204


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 25  KREGAGPHNWGTLKDE 72
           KREG+G  NWGT+ DE
Sbjct: 178 KREGSGRGNWGTVTDE 193


>06_03_0444 + 20864183-20864436,20864831-20865818
          Length = 413

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 181 WVLGVRVPVADRL-QHQLPELSLQWFRLQSLS 89
           W L V  PV   + Q QLP  S +W  LQSLS
Sbjct: 350 WPLTVFFPVEMYIRQRQLPRFSAKWVALQSLS 381


>01_06_0541 -
           30088910-30089107,30089421-30089477,30089563-30089721,
           30090639-30090777,30090863-30091247,30091612-30091816
          Length = 380

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 25  KREGAGPHNWGTLKDE 72
           KR+GAG  NWGT  DE
Sbjct: 178 KRDGAGRGNWGTATDE 193


>04_04_0889 -
           29105506-29106502,29106909-29107069,29107259-29107390,
           29107484-29107645
          Length = 483

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 228 ESFILIQGEFPWFFLSGCWAFGFRLLTVSSTSFRSF 121
           E+F++    +P F    CW  G +LL +   SF  F
Sbjct: 141 EAFLVPTPYYPAFDRDCCWRSGIKLLPIECHSFNDF 176


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 183 SGCWAFGFRLLTVSSTSF-RSFLFSGFAFRACLVNFIDLIFKSPPIMRAS 37
           S C   GF+ L    T F +SFLF+G A+ +  V+  ++  K P  M  S
Sbjct: 367 SDCNCKGFQYLKGEGTCFPKSFLFNGRAYPSHFVSPRNMYLKIPISMNIS 416


>02_04_0174 - 20607745-20608998
          Length = 417

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 459 STTCLIVERELDSQHTLLTTHTLR 388
           +TTC +    LD   TL+  HTLR
Sbjct: 56  NTTCPVTRSPLDRAFTLIPNHTLR 79


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 126 SFLFSGFAFRACLVNFIDLIFKSP 55
           +F+ SGF  +ACLV  +++++  P
Sbjct: 584 NFIVSGFGNQACLVKHLEIMYTFP 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,254,301
Number of Sequences: 37544
Number of extensions: 167957
Number of successful extensions: 278
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)