Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O10
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    34   0.043
Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical pr...    32   0.23 
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AL110477-9|CAB54333.1|  540|Caenorhabditis elegans Hypothetical ...    27   6.6  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 25/92 (27%), Positives = 35/92 (38%)
 Frame = +1

Query: 7   GVKPIDKREGAGPHNWGTLKDEIDEINKXXXXXXXXXXKAPEAGAGDGQQXXXXXXXXXX 186
           GV+  DK++G G  NWG  KDE+    +          + PE    +             
Sbjct: 190 GVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTE-PEV-PREKTAEELAYEAELA 247

Query: 187 XXXXXXXXXXYKALRNAQRTMPNYNLRKAGEG 282
                     +KA   A+   P +N RKAGEG
Sbjct: 248 VLAKQKTLKEFKAA--AKADAPKFNTRKAGEG 277


>Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.5 protein.
          Length = 325

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = -2

Query: 243 TLCISESFILIQGEFPWFFLSGCWAFGFRLLTVSSTSFRSFLFSGFAFRACLVNFIDLIF 64
           +LC +  F LI  +  +F +   W   F   TVS +   + L   F    C+  FI L+F
Sbjct: 194 SLCFAFMFALIFPQILFFVIRISW---FLYHTVSQSQATNRLQKQFFVALCIQVFIPLVF 250

Query: 63  KSPPIMRASAFTFIDWFH 10
            S P+       ++D+++
Sbjct: 251 ISIPVAYIILAVYLDYYN 268


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -2

Query: 240 LCISESFILIQGEFPWFFLSGCWAFGFRLLTVSSTSFRSFLFSGFAFRACLVNFIDLIFK 61
           LC+   F LI  +  +F LS  W   +   TVS +   + L   F F  C+  FI +   
Sbjct: 198 LCLIFMFSLIIPQALYFVLSIFW---YLYHTVSKSQVTNRLQKQFFFALCIQVFIPIFVL 254

Query: 60  SPPIM 46
           S P++
Sbjct: 255 SFPVL 259


>Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical
           protein C06B8.6 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 108 FAFRACLVNFIDLIFKSPPIMRASAFTFIDWFHASC 1
           F+F  C+ +   ++FK+PP M +  F+ + +   +C
Sbjct: 35  FSFPLCIFSGWVIVFKTPPSMSSVKFSLLTFHFWTC 70


>AL110477-9|CAB54333.1|  540|Caenorhabditis elegans Hypothetical
           protein Y113G7B.14 protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 200 NSPWMSIKLSEMHNVRCLTII*ERPVKVRTLANGRIW*CLSARKKVNAE 346
           N  W  I L E HN+R      ++   + TLA+   W C++A    N+E
Sbjct: 183 NIKWTRIVLDEAHNIRDSNT--KKSTAIATLASKNRW-CVTAAPFQNSE 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,445,681
Number of Sequences: 27780
Number of extensions: 135204
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)