Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O05
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   179   1e-46
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   179   1e-46
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.22 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   0.90 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   0.90 
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   1.2  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   4.8  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   4.8  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   8.4  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    24   8.4  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    24   8.4  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  179 bits (436), Expect = 1e-46
 Identities = 79/137 (57%), Positives = 104/137 (75%)
 Frame = +3

Query: 9   KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVR 188
           + QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR R+R
Sbjct: 5   RTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIR 64

Query: 189 KNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLY 368
           K   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH+LY
Sbjct: 65  KTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLY 124

Query: 369 MKAKGNVFKNQRVLMEY 419
           ++AKGN FK++R L+E+
Sbjct: 125 LEAKGNTFKHKRALIEH 141


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  179 bits (436), Expect = 1e-46
 Identities = 79/137 (57%), Positives = 104/137 (75%)
 Frame = +3

Query: 9   KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVR 188
           + QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR R+R
Sbjct: 5   RTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIR 64

Query: 189 KNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLY 368
           K   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH+LY
Sbjct: 65  KTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLY 124

Query: 369 MKAKGNVFKNQRVLMEY 419
           ++AKGN FK++R L+E+
Sbjct: 125 LEAKGNTFKHKRALIEH 141


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 199 SVFLRTRAREWTATGFLMTRPSLIILRMFC 110
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 239 PLTKATVTSFP-ARLCVFANTSAGMDSNWFLDDQTILDHLTD 117
           P   A + SF  +R CV  N    +  NW+   + I  HLTD
Sbjct: 121 PFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQRHLTD 162


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 119 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 24
           +VLS +     +D  +  PHL   +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 3    TRKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 140
            T++L +RLAA + RC  ++ W D          +   NI+K+I DG
Sbjct: 1111 TKQLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -3

Query: 260 SSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGIS 99
           S ISC SP+T  TV SF A L + +    G    W    + +L  L    S +S
Sbjct: 291 SIISCQSPITTLTV-SFDASLLI-SGDKDGNVLVWDSVSRQVLRRLVQYYSPVS 342


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +3

Query: 57  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 203
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 204 RRKGR 218
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 227
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 99   TNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 197
            T S   ++ +IK+    +KP    ++++++KN+
Sbjct: 912  TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 1   ARGSYRRGLQPLLCDAVK 54
           A   Y+RG QPLL D V+
Sbjct: 190 ANPKYKRGFQPLLPDVVQ 207


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 18  KRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 125
           K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 323 KALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,015
Number of Sequences: 5004
Number of extensions: 31421
Number of successful extensions: 98
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)