Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O05
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.2  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   7.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   9.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 115 FCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFLV 2
           + + L+L   LISF     F+LP    E  +L  + L+
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILL 273


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 244 VQLMLECHKKNYGFKGK 294
           VQL +EC  K + F  K
Sbjct: 59  VQLYIECAMKKFSFVDK 75


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 115 FCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFLV 2
           + + +++    ISF +  TF+LP    E  +L  + L+
Sbjct: 247 YTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILI 284


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 115 FCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFLV 2
           + + +++    ISF +  TF+LP    E  +L  + L+
Sbjct: 247 YTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILI 284


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 115 FCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFLV 2
           + + L++    ISF S   F+LP    E  SL  + L+
Sbjct: 239 YTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLSISILL 276


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 365 QGMVEMPVYLLRCSVF 318
           + M E P+Y L C +F
Sbjct: 198 ENMPEFPLYQLSCILF 213


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 172 EWTATGFLMTRPSLIILRMFCLELVLAISL 83
           +W     ++ R  LII  +F +   +A+ L
Sbjct: 518 DWKFAAMVIDRMCLIIFTLFTIIATIAVLL 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,102
Number of Sequences: 438
Number of extensions: 2139
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)