Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O04
         (102 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...    32   0.047
U50070-1|AAR85907.1|  778|Caenorhabditis elegans Forkhead transc...    28   1.0  
Z83107-2|CAB05503.2|  356|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z83107-1|CAB05506.2|  461|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score = 32.3 bits (70), Expect = 0.047
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 10  WNMPFAFCTREKQP 51
           W MPFAFCTRE+ P
Sbjct: 123 WTMPFAFCTRERLP 136



 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 5   EDGTCPSLSARGRNNPVCEFAESAEEGPTTRF 100
           E  T P         P  EFAES   GPTT+F
Sbjct: 121 EAWTMPFAFCTRERLPWTEFAESVYTGPTTQF 152


>U50070-1|AAR85907.1|  778|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 7, isoform a protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 99  KRVVGPSSADSANSHTGLFLPRAES 25
           KR+ GPSS+DSA +    +LPR  S
Sbjct: 99  KRLAGPSSSDSAGTSGYGYLPRPAS 123


>Z83107-2|CAB05503.2|  356|Caenorhabditis elegans Hypothetical
          protein F32A7.3b protein.
          Length = 356

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 58 AHRVVSPACRKRRACSILV 2
          AH  +S  C KRR C+++V
Sbjct: 13 AHTRISELCDKRRKCTVVV 31


>Z83107-1|CAB05506.2|  461|Caenorhabditis elegans Hypothetical
           protein F32A7.3a protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 58  AHRVVSPACRKRRACSILV 2
           AH  +S  C KRR C+++V
Sbjct: 118 AHTRISELCDKRRKCTVVV 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,047
Number of Sequences: 27780
Number of extensions: 27648
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)