Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O03
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   4.1  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   5.4  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   5.4  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   7.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    24   9.4  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    24   9.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   9.4  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    24   9.4  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 279 ISNYPTRLLQNLNMRGY*SLL*SKCV*RSHNHVCGM*LGNCKSFYYLNNHI-HMYLILNY 103
           + NY T     ++++GY  +   K   R+ N V    +  C +F+  + ++ H  +++ Y
Sbjct: 390 VENYDTFFAPQMSLKGYKGVHFPKSRVRTMNEVERRIVDGCATFFKTSKYVMHEKMVIEY 449


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 316 DYLDWTIVNGYVDIKLPNKASTKSEYAWVLKFTL 215
           DYL ++I+ G + I L + A T+S       FTL
Sbjct: 633 DYLRYSILMGSIGITLFSFAKTRSGILGAASFTL 666


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 195 SVKRIYFKVNFNTHAYSDFVEALLGSLISTYPLTI 299
           SV R+Y   NF      + ++ LLG LI  +P+ +
Sbjct: 500 SVGRMYIN-NFQDKGRQETIDLLLGRLIDQHPVIL 533


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 194 ER*THLLQSKL*YPRIFRFCRSLVG*FDINISIDNCPIQVIAFVAQHL 337
           +R T L+   + YP      R+    F I I +DN   ++I   A+H+
Sbjct: 215 KRKTFLVDKNI-YPNTLSVLRTRASGFGIKIELDNITPELITKSAKHV 261


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 123 YVYGCLNNKNFYNYLVTYHTR 185
           Y++G  +  NF+N L  YH +
Sbjct: 256 YIFGGTDGANFFNDLWCYHPK 276


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 339 LRCWATKAITWIGQL 295
           +RCW  + +TW+ ++
Sbjct: 661 IRCWVDEYMTWVAEI 675


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 133  PYTYVFDSELLNCYITIT 80
            PYTY+    LL  ++TI+
Sbjct: 2126 PYTYILPQNLLRKFVTIS 2143


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 195 SVKRIYFKVNFN-THAYSDFVEALLGSLIST 284
           SVK ++ ++  +   AY DF E LL S +ST
Sbjct: 290 SVKPLHIQLLCDKADAYIDFAETLLDSCVST 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,846
Number of Sequences: 5004
Number of extensions: 26947
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)