Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O03
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0899 - 8689125-8689383,8689540-8689826                           32   0.18 
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066...    29   0.95 
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790...    29   1.3  
10_08_0296 - 16595193-16595222,16595923-16596067,16597387-165974...    28   2.9  
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980...    27   6.7  

>12_01_0899 - 8689125-8689383,8689540-8689826
          Length = 181

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 364 YLHSGNYKVEMLGNEGDYLDWT 299
           YLH  NYK+  L  +GD ++WT
Sbjct: 103 YLHLENYKISNLTGQGDLMEWT 124


>06_03_0608 +
           22705321-22705652,22705809-22706178,22706264-22706656,
           22707183-22707204,22707257-22707928,22708019-22708494
          Length = 754

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 364 YLHSGNYKVEMLGNEGDYLDW 302
           YLH  NYK+  L  +GD ++W
Sbjct: 118 YLHLENYKISNLTGQGDSMEW 138


>07_03_0358 -
           17177253-17177369,17177635-17177931,17178961-17179032,
           17179117-17179383,17179752-17179910,17180194-17180295,
           17180696-17180767,17181105-17181200,17181710-17181871,
           17181941-17182021,17182837-17183094,17183173-17183275,
           17183412-17183542,17184827-17184919,17184999-17185099,
           17186271-17186355,17186487-17186701,17186779-17186842,
           17187128-17187214,17188922-17189022,17190206-17190397,
           17190533-17190599,17191211-17191351
          Length = 1020

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 87  VI*QFNSSESNTYVYGCLNNKNFYNYLVTYHTRGCVSVKRIYFKVNFNTHAY-SDFVEAL 263
           V+ Q   +  ++  +G L +  FYN   +YH++G +     Y+  + N  +   DFV   
Sbjct: 257 VVEQLTETALSSSNHGLLKSHAFYNLARSYHSKGDIETAGRYYMASVNEISKPQDFVLPF 316

Query: 264 LG 269
            G
Sbjct: 317 FG 318


>10_08_0296 -
           16595193-16595222,16595923-16596067,16597387-16597488,
           16597630-16597685,16598245-16598399,16598755-16598918,
           16599116-16599237,16599542-16599754,16599874-16600023,
           16600909-16600959
          Length = 395

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 337 EMLGNEGDYLDWTIVNGY 284
           ++L  E +Y  WT+VNGY
Sbjct: 175 QVLSRESEYAAWTLVNGY 192


>04_03_0301 +
           14094370-14094584,14096694-14096727,14098084-14098095,
           14098400-14098574,14099064-14099299,14099396-14100457
          Length = 577

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 240 YSDFVEALLGSLISTYPLTIVQSK*SPSLPNIS 338
           + +F+  +L S +   P ++VQ+  SP+ PN S
Sbjct: 96  FCNFMRRILKSFVMVKPSSLVQTNQSPTCPNKS 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,105,748
Number of Sequences: 37544
Number of extensions: 137182
Number of successful extensions: 256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)