Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O02
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    62   4e-11
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    29   0.64 

>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
 Frame = +2

Query: 113 KLWKKMSFFVAFPAIGLGMLNAYLA---HQEH-QHERPPFVAYDYMRIRSKRFPWGDGQK 280
           + WKK+++++  PA+ L   NAY     HQEH +H       Y +  +R K++PWGDG K
Sbjct: 55  EFWKKVTYYIGGPALILASANAYYIYCKHQEHAKHVEDTDPGYSFENLRFKKYPWGDGSK 114

Query: 281 SLFHNPHVNAL 313
           +LF N  VN L
Sbjct: 115 TLFWNDKVNHL 125


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -3

Query: 428 SVLITY-HNTQLFLDPNKANLHSSIYLNKQINDRLHSRWEEHSHGGCGREISGHHPRGNA 252
           S L+ Y H     L P +  + +S  L +      HS  +E+ HG C  +      +G  
Sbjct: 49  SALLGYDHTLWNTLLPERPTIDASFLLRRAQG---HSEGDEYRHGTCESKCGHIFRKGEV 105

Query: 251 YYEC-ACS 231
           +Y C  CS
Sbjct: 106 FYRCKTCS 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,245
Number of Sequences: 5004
Number of extensions: 41186
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)