Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O02
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047...    34   0.093
09_04_0436 - 17558603-17559265,17559322-17559384                       31   0.49 
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269...    29   2.0  
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703...    29   3.5  
10_02_0174 - 6202334-6204922                                           27   8.0  
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956     27   8.0  

>03_06_0120 +
           31804301-31804412,31804525-31804631,31804714-31804756,
           31806069-31806187
          Length = 126

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 167 MLNAYLAHQEHQH-ERPPFVAYDYMRIRSKRFPW 265
           +L AY   + H H + PP  AY Y+ IR+K FPW
Sbjct: 56  LLAAYNLSKGHPHFDEPP--AYPYLHIRNKEFPW 87


>09_04_0436 - 17558603-17559265,17559322-17559384
          Length = 241

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 73  NACCYCWWTWRWLQAVEE 126
           +A C+C W WRWLQ + E
Sbjct: 99  SARCWCAWRWRWLQWLRE 116


>01_06_0807 +
           32125987-32126029,32126030-32126208,32126760-32126943,
           32127714-32127788,32128079-32128188,32128747-32128965,
           32129124-32129279,32129759-32129911,32130223-32130349,
           32131598-32131728,32131858-32132139
          Length = 552

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 272 HHPRGNAYYECACSHRQQKVVVHAGVLDGLSKH 174
           H  R      C C+HRQQK+   AG     S+H
Sbjct: 424 HKRRSRDTTLCCCAHRQQKIAAFAGSRIIFSRH 456


>07_03_1555 - 27669981-27670148,27670232-27670315,27670349-27670360,
            27670683-27670761,27670840-27671078,27671167-27671260,
            27671342-27671484,27671688-27671786,27671870-27671998,
            27672123-27672197,27672308-27672520,27672581-27672676,
            27673282-27673380,27673600-27673839,27674212-27674322,
            27674429-27674626,27674720-27674835,27675076-27675193,
            27675761-27675866,27675972-27676030,27676259-27676388,
            27676730-27676887,27677672-27677887,27677972-27678082,
            27678313-27678472,27679364-27679509,27679603-27679695,
            27680610-27680706,27681224-27681294,27681407-27681505,
            27682037-27682168,27682287-27682729,27683252-27683564,
            27684301-27684549
          Length = 1631

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 173  NAYLAHQEHQHERPPFVAYDYMRIRSKRFP 262
            NAY  +Q+H   RP  V  D + ++S R P
Sbjct: 924  NAYTVYQQHLASRPVNVLRDLLELKSDRAP 953


>10_02_0174 - 6202334-6204922
          Length = 862

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 185 AHQEHQHERPPFVAYDYMRIRSKRFPW-GDGQ-KSLFHNPHVNALPSGYEDD 334
           A  E +H+      Y  M  ++    W GDG   S+ +NPH+ A   GY+ D
Sbjct: 346 ASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQD 397


>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
          Length = 397

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 347 KQINDRLHSRWEEHSHGGCGREISGHHPRGNAYYECACSH 228
           +++  R+H  W  + HG        HH +G   + CA  H
Sbjct: 312 EEMMKRMHLYWPPYGHGYTSYYHHHHHHQGGQAHPCANLH 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,685
Number of Sequences: 37544
Number of extensions: 271594
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)