Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O02
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    72   3e-13
Z75548-4|CAA99912.1|  117|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U88314-4|AAK71360.1|  494|Caenorhabditis elegans Let-23 fertilit...    27   9.5  
AF045611-1|AAC38960.1|  494|Caenorhabditis elegans inositol tris...    27   9.5  

>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +2

Query: 119 WKKMSFFVAFPAIGLGMLNAYLAHQEHQ-HERPPFVAYDYMRIRSKRFPWGDGQKSLFHN 295
           WKK+ F  + P + L M  A+  H++H  HERP  V Y ++ +R+K FPW DG  SLFHN
Sbjct: 51  WKKIFFIASIPCLALTMYAAFKDHKKHMSHERPEHVEYAFLNVRNKPFPWSDGNHSLFHN 110

Query: 296 PHVNALPS-GYEDD 334
                +P  G+E D
Sbjct: 111 KAEQFVPGVGFEAD 124


>Z75548-4|CAA99912.1|  117|Caenorhabditis elegans Hypothetical
           protein R90.4 protein.
          Length = 117

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -3

Query: 374 NLHSSIYLNKQINDRLHSRWEEHSHG-----GCGREISGHHPRGNAYYEC 240
           N+   +Y N+ + DRL       S+G     G  REIS   P+ N Y++C
Sbjct: 19  NIKIKLYENEILFDRLMEESRTDSNGQFRVSGSKREISRIDPKVNVYHKC 68


>Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical
           protein T21C9.4 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 440 LMDISVLITYHNTQLFLDPNKANLHSSIYLNKQINDRLHSR 318
           L D+S+L+  + T  ++  NK  +  SIY  K +N+RL+++
Sbjct: 64  LKDLSMLVLDNTTYTYVPHNKQYVKESIY--KLMNNRLNNQ 102


>U88314-4|AAK71360.1|  494|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform a protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 428 SVLITYHNTQLFLDPNKANLHSSIYLNKQINDRLHSRWEEHSHGGCGREISGHHP 264
           S+L T + T L   P    L  + ++ K  +  L S  EE  H     E SGHHP
Sbjct: 52  SLLFTTNITILMSAPQHRQLRRAAHITKIASIDLCSL-EEEDHEDLVLEESGHHP 105


>AF045611-1|AAC38960.1|  494|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 1 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 428 SVLITYHNTQLFLDPNKANLHSSIYLNKQINDRLHSRWEEHSHGGCGREISGHHP 264
           S+L T + T L   P    L  + ++ K  +  L S  EE  H     E SGHHP
Sbjct: 52  SLLFTTNITILMSAPQHRQLRRAAHITKIASIDLCSL-EEEDHEDLVLEESGHHP 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,238
Number of Sequences: 27780
Number of extensions: 234273
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)