Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O01
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    50   3e-07
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    26   3.8  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   5.1  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    25   6.7  
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    25   6.7  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   6.7  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +1

Query: 223 YAVCVLLLIASTKAFYLPGLAPVNYCTAEDTVKTCKNEIPLYVNRLNTEESVIPFEYH-- 396
           + V V +L+ +  +F L  L+P NY     ++ T  N I  ++        +  +EY+  
Sbjct: 13  FVVFVSVLLQTCFSFQLTPLSPKNYPPGA-SIDTTVNTISPFIGD-GRGSDIFNYEYYDE 70

Query: 397 HFDFCTADESESPVENLGQVVFGERIRPSPYKIKFLEKID 516
            F FC  +      E+LG V+FG+R+  SP +IK LE  D
Sbjct: 71  RFHFCRPENIAKQSESLGSVLFGDRLYNSPIEIKMLENQD 110


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 277 GLAPVNYCTAEDTVKTCKNEIPLYVNRLNTEESVIPFEYHHFDFCTADESESPVENL 447
           G+ PVNYCT    +   K+     + R  +   ++  +    D+C+  + +SP++NL
Sbjct: 333 GMFPVNYCTRIYDLHVQKSHETRSLERARSIRRIVSDDPR--DYCSPIK-QSPIQNL 386


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 338 YHSTLTD*IQKNPLFRLNI 394
           YHST+TD I K+  +RL +
Sbjct: 50  YHSTVTDDISKSQPYRLGV 68


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 375 GFFCIQSVNVEWYFILTSFHGVFCCTIVHRG 283
           G F I  +  E+Y  LT       CTI+ RG
Sbjct: 346 GLFYIDKLGDEYYTFLTGCKNPKACTILLRG 376


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 286 PVNYCTAEDTVKTCK 330
           PV YC  E T+K CK
Sbjct: 21  PVEYCEFEGTLKKCK 35


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 251 HLQRHFIYPA*PL*TIVQQKTP*KLVRMKY 340
           HL RH I+P     ++ Q   P +L++ KY
Sbjct: 24  HLDRHLIFPLLEFLSLRQTHDPKELLQAKY 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,551
Number of Sequences: 5004
Number of extensions: 45706
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)