Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O01
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...   132   1e-31
Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    48   5e-06
Z81523-12|CAH60774.1|  364|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z81086-10|CAH60775.1|  364|Caenorhabditis elegans Hypothetical p...    29   2.6  
U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fb...    27   8.0  
AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score =  132 bits (319), Expect = 1e-31
 Identities = 59/97 (60%), Positives = 74/97 (76%)
 Frame = +1

Query: 220 LYAVCVLLLIASTKAFYLPGLAPVNYCTAEDTVKTCKNEIPLYVNRLNTEESVIPFEYHH 399
           L  + ++  +AS  AFYLPGLAPVN+C  E     C + I LYVN L+++ SVIP+EYH 
Sbjct: 8   LTKLLLVSFLASASAFYLPGLAPVNFCEVEKA--NCPSNISLYVNHLDSDRSVIPYEYHS 65

Query: 400 FDFCTADESESPVENLGQVVFGERIRPSPYKIKFLEK 510
           FDFCT +E ESPVENLGQV+FGERIRPSPYK+ FL++
Sbjct: 66  FDFCTVNEDESPVENLGQVLFGERIRPSPYKVAFLQE 102


>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
 Frame = +1

Query: 244 LIASTKAFYLPGLAPVNYCTAEDTVKTCKNEIPLYVNRLNTEESVIPFEYHHFDFC--TA 417
           LI   + FY+PG+APV++  A D        I +   +L +  +++PFEY+   FC    
Sbjct: 15  LIPLEQGFYVPGVAPVDF-KAGDV-------IDVKAIKLTSSNNIMPFEYYSVPFCKPAN 66

Query: 418 DESESPVENLGQVVFGERIRPSPY 489
            + +   ENLG+V+ G+RI  +PY
Sbjct: 67  GDIQYKSENLGEVMRGDRIVNTPY 90


>Z81523-12|CAH60774.1|  364|Caenorhabditis elegans Hypothetical
           protein F32H2.11 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 40  TESKKRKTK*NSFWCHCIVHDYVDYLFQ 123
           T +   KT  NS  C+C +HDY  +L Q
Sbjct: 64  TSTSDYKTALNSIRCYCKMHDYPFFLIQ 91


>Z81086-10|CAH60775.1|  364|Caenorhabditis elegans Hypothetical
           protein F32H2.11 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 40  TESKKRKTK*NSFWCHCIVHDYVDYLFQ 123
           T +   KT  NS  C+C +HDY  +L Q
Sbjct: 64  TSTSDYKTALNSIRCYCKMHDYPFFLIQ 91


>U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 8 protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 409 CTADESESPVENLGQVVFGERI 474
           CT D S SP+E+LG+ +  ++I
Sbjct: 11  CTFDPSASPIESLGRSIGAQKI 32


>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 349 RRVVFHSYKFSRCLLLY 299
           R+ V +SYKF RCL +Y
Sbjct: 5   RKSVIYSYKFCRCLCVY 21


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,179,729
Number of Sequences: 27780
Number of extensions: 257831
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)