Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N24
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    27   1.4  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   3.1  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   7.2  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   7.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   9.5  

>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 38  PLPGSKTCRQVPIGVFR*HYFRTSTS-RLSEFTILDHIIIK-QQPRFWSKHSLYIVKKP 208
           PLPGS   + +  G F  H  +T T  +   FT       + Q  +F+  +S Y++K P
Sbjct: 50  PLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKNP 108


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 492 SFKDIFYQFQLYWK*YPVLSMLFIICTFFYILYRNPVRY-IEISNLKHILK**YGFTVNW 316
           ++K   Y+F L +  Y   ++LF++C    +    P+     IS +K I+    GF  + 
Sbjct: 168 AWKPWTYKFSLNYLIYTAFALLFVLCAAIMVRDVAPLAAGSGISEIKCIIS---GFLRDS 224

Query: 315 FIGFRL 298
           F+ FR+
Sbjct: 225 FLSFRV 230


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 175 PKSWLLFNDDVVQDGKLT*PRSTGSKVMLPEHTYWYLATG 56
           P   + F    + + +   P S   K  LPE  +W L TG
Sbjct: 96  PNEGIRFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTG 135


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 101 RTSTSRLSEFTILDHIIIKQQPRFWSKHSLYIVKKPI 211
           RTS+    E TI + +I +++     KH +YI + PI
Sbjct: 876 RTSSGIQEEDTIPNEMIDEERMLDLEKHFMYITESPI 912


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 283 KQIFPVKI-YLLVYINQYHKLQYIRD 209
           KQ+ P++   +L  I+Q  KLQY+RD
Sbjct: 287 KQVVPIQDPRILAKIHQTFKLQYLRD 312


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 192 YRLCFDQNLGCCLMMMWSRMVN 127
           Y + F Q L  CL   W R +N
Sbjct: 515 YTVTFSQQLWYCLARSWERYIN 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,240
Number of Sequences: 5004
Number of extensions: 52500
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)