Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N24
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191...    31   0.79 
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786...    27   9.7  

>01_06_1397 -
           37017468-37017561,37017763-37017836,37019128-37019193,
           37019543-37019623,37019735-37019943,37020096-37020192,
           37020497-37020514,37020597-37020727,37021040-37021088,
           37021450-37021539,37021616-37021721,37021815-37021885,
           37021963-37022037,37022059-37022120,37022677-37022887,
           37023599-37024069,37024387-37024719
          Length = 745

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 4   RGHSGRTAWPATAPRFKNLSPSTNRCVPVALL 99
           +G  G   +P+   R  +LSP++ RC P+A+L
Sbjct: 45  QGAEGSLPFPSNEIRISHLSPTSERCPPLAIL 76


>07_03_1782 +
           29477748-29478169,29478257-29478413,29478518-29478610,
           29478753-29478938,29479107-29479187,29479788-29479925,
           29480044-29480208
          Length = 413

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 361 IRYFYIPYWISV*YIKKCTNYEKHGQN 441
           +  +++PYWI V ++   T    HG N
Sbjct: 278 LNLYFVPYWIFVMWLDFVTYLHHHGHN 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,312
Number of Sequences: 37544
Number of extensions: 277439
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)