Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N24
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-8|CAB03483.2|  361|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81062-15|CAB02950.2|  361|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z81575-5|CAB04631.2|  353|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81139-8|CAB03483.2|  361|Caenorhabditis elegans Hypothetical
           protein W05H5.7 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 478 FLSISVILEIIPCSVHAFHNLYIFLYTIQKSSKVYRNI*FKTYPKMIIW---LYGKLV 314
           F  +S I+E++   +  FH + I LY + K    +RN+     P   +W   + GKL+
Sbjct: 28  FQILSSIIELV-FYISCFHLMTISLYVMLKVQIFHRNLYILYIPMFCVWYGLIAGKLI 84


>Z81062-15|CAB02950.2|  361|Caenorhabditis elegans Hypothetical
           protein W05H5.7 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 478 FLSISVILEIIPCSVHAFHNLYIFLYTIQKSSKVYRNI*FKTYPKMIIW---LYGKLV 314
           F  +S I+E++   +  FH + I LY + K    +RN+     P   +W   + GKL+
Sbjct: 28  FQILSSIIELV-FYISCFHLMTISLYVMLKVQIFHRNLYILYIPMFCVWYGLIAGKLI 84


>Z81575-5|CAB04631.2|  353|Caenorhabditis elegans Hypothetical
           protein R08H2.5 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 495 YSFKDIFYQFQLYWK*YPVLSMLFIICTFFYILYRNPV 382
           YSF D +     + K   ++S+ F +  F+ ILY+ PV
Sbjct: 20  YSFFDTWRSIISFSKIIQLVSLPFQVLAFYVILYKTPV 57


>Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical
           protein T05E11.5 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -2

Query: 203 FLQCIDYVLTKILAVV***CGPGW*THLASKYWF*SNATGTHLLVLGDRFLNLGAVAGQA 24
           +L  ID+    I+A++   C P   +HL  ++W  +N  G    +LG   L+L +    +
Sbjct: 239 YLFKIDFDRYDIIALLM--CSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGS 296

Query: 23  VL 18
           +L
Sbjct: 297 LL 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,791
Number of Sequences: 27780
Number of extensions: 285867
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)