Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N22
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   5.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 217 PNGVLDFISGHWSIGT 170
           P  +L  ISG+WS GT
Sbjct: 96  PMALLYEISGNWSFGT 111


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 180 LSVRVCLQTPARRKRATCADSHRV 109
           ++V VC++   RR R  CA + ++
Sbjct: 101 IAVCVCMRKCPRRHRPVCASNGKI 124


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 266 RHQQVPRSQVRTRWCRPRG 322
           RHQ    S+++  W +P+G
Sbjct: 21  RHQSDRYSKLKRNWRKPKG 39


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 207 TPFGQLPVLEIDGKQFTQ 260
           TPF  LP+L++ G+  T+
Sbjct: 183 TPFTVLPLLKVWGRYTTE 200


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 207 TPFGQLPVLEIDGKQFTQ 260
           TPF  LP+L++ G+  T+
Sbjct: 183 TPFTVLPLLKVWGRYTTE 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,560
Number of Sequences: 438
Number of extensions: 2750
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)