Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N20
         (314 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X63237-1|CAA44911.1|  156|Homo sapiens ubiquitin protein.              98   5e-21
S79522-1|AAB21188.1|  156|Homo sapiens ubiquitin carboxyl extens...    98   5e-21
M10939-1|AAA36788.1|  152|Homo sapiens protein ( Human ubiquitin...    98   5e-21
BC066293-1|AAH66293.1|  156|Homo sapiens ribosomal protein S27a ...    98   5e-21
BC053371-1|AAH53371.1|  156|Homo sapiens ribosomal protein S27a ...    98   5e-21
BC001392-1|AAH01392.1|  156|Homo sapiens ribosomal protein S27a ...    98   5e-21
AB061854-1|BAB79488.1|  121|Homo sapiens ribosomal protein S27A ...    98   5e-21
AB007163-1|BAA25826.1|   51|Homo sapiens ribosomal protein S27a ...    88   4e-18

>X63237-1|CAA44911.1|  156|Homo sapiens ubiquitin protein.
          Length = 156

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 RKKKVKLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF-KD 305
           ++KKVKLAVL+YYKVDENGKI RLRREC  ++CGAGVFMA   DRHYCGKC  T  F K 
Sbjct: 94  KRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKP 153

Query: 306 DDK 314
           +DK
Sbjct: 154 EDK 156


>S79522-1|AAB21188.1|  156|Homo sapiens ubiquitin carboxyl extension
           protein protein.
          Length = 156

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 RKKKVKLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF-KD 305
           ++KKVKLAVL+YYKVDENGKI RLRREC  ++CGAGVFMA   DRHYCGKC  T  F K 
Sbjct: 94  KRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKP 153

Query: 306 DDK 314
           +DK
Sbjct: 154 EDK 156


>M10939-1|AAA36788.1|  152|Homo sapiens protein ( Human ubiquitin
           mRNA, 3' end. ).
          Length = 152

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 RKKKVKLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF-KD 305
           ++KKVKLAVL+YYKVDENGKI RLRREC  ++CGAGVFMA   DRHYCGKC  T  F K 
Sbjct: 90  KRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKP 149

Query: 306 DDK 314
           +DK
Sbjct: 150 EDK 152


>BC066293-1|AAH66293.1|  156|Homo sapiens ribosomal protein S27a
           protein.
          Length = 156

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 RKKKVKLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF-KD 305
           ++KKVKLAVL+YYKVDENGKI RLRREC  ++CGAGVFMA   DRHYCGKC  T  F K 
Sbjct: 94  KRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKP 153

Query: 306 DDK 314
           +DK
Sbjct: 154 EDK 156


>BC053371-1|AAH53371.1|  156|Homo sapiens ribosomal protein S27a
           protein.
          Length = 156

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 RKKKVKLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF-KD 305
           ++KKVKLAVL+YYKVDENGKI RLRREC  ++CGAGVFMA   DRHYCGKC  T  F K 
Sbjct: 94  KRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKP 153

Query: 306 DDK 314
           +DK
Sbjct: 154 EDK 156


>BC001392-1|AAH01392.1|  156|Homo sapiens ribosomal protein S27a
           protein.
          Length = 156

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 RKKKVKLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF-KD 305
           ++KKVKLAVL+YYKVDENGKI RLRREC  ++CGAGVFMA   DRHYCGKC  T  F K 
Sbjct: 94  KRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKP 153

Query: 306 DDK 314
           +DK
Sbjct: 154 EDK 156


>AB061854-1|BAB79488.1|  121|Homo sapiens ribosomal protein S27A
           protein.
          Length = 121

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 RKKKVKLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF-KD 305
           ++KKVKLAVL+YYKVDENGKI RLRREC  ++CGAGVFMA   DRHYCGKC  T  F K 
Sbjct: 59  KRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKP 118

Query: 306 DDK 314
           +DK
Sbjct: 119 EDK 121


>AB007163-1|BAA25826.1|   51|Homo sapiens ribosomal protein S27a
           protein.
          Length = 51

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = +3

Query: 141 VKLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 281
           VKLAVL+YYKVDENGKI RLRREC  ++CGAGVFMA   DRHYCGKC
Sbjct: 1   VKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKC 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,584,034
Number of Sequences: 237096
Number of extensions: 723161
Number of successful extensions: 1640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)