Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N19
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 34 0.061
11_06_0574 + 25098231-25099970 28 3.0
11_06_0570 + 25055864-25057603 28 3.0
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 27 5.3
04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108 27 5.3
03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595... 27 5.3
11_06_0715 + 26552962-26553510,26553578-26555746 27 9.2
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 27 9.2
10_06_0080 + 10441055-10443856 27 9.2
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 33.9 bits (74), Expect = 0.061
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 445 LSCYVDRRARREPRQQTNPHQISGHNDNIYPLGR-LIAAEGRPRTSVLPSGGFQRLNNIL 269
L+C+ DRR RR+PR+Q+ D++ LG+ L A + + V P Q ++L
Sbjct: 5 LACFGDRRRRRQPRRQSPARSPPPRPDHVALLGKALTAVDVEAKEEVEPPPLLQEAKDVL 64
>11_06_0574 + 25098231-25099970
Length = 579
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -3
Query: 448 LLSCYVDRRAR--REPRQQTNPHQISGHNDNIYPLGRLIA 335
LL+ Y D AR ++ R T+PH S + + P+GRL++
Sbjct: 358 LLADYDDTLARIYQQGRGSTSPHSPSSSSSSSNPIGRLVS 397
>11_06_0570 + 25055864-25057603
Length = 579
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -3
Query: 448 LLSCYVDRRAR--REPRQQTNPHQISGHNDNIYPLGRLIA 335
LL+ Y D AR ++ R T+PH S + + P+GRL++
Sbjct: 358 LLADYDDTLARIYQQGRGSTSPHSPSSSSSSSNPIGRLVS 397
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 379 SGHNDNIYPLGRLIAAEGRPRTSVLPSGGFQ 287
SG ND + +LI E +P TS LP G Q
Sbjct: 39 SGENDERQQILQLIIEEIQPETSELPDGRIQ 69
>04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108
Length = 510
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 116 VPHNQYNKLGIIFDYLHFLLPRWPSCITVRLS 21
VP + + +G + Y+HF +P P RLS
Sbjct: 10 VPEDVESSIGTVLSYIHFAIPDAPVSSHARLS 41
>03_02_0640 -
10058828-10058971,10059066-10059201,10059512-10059590,
10060861-10060927,10061014-10061100,10061474-10061567,
10061663-10061749,10062267-10062328,10062485-10062584,
10062729-10062827,10062969-10063033,10063617-10063694,
10063787-10063873,10064383-10064466,10064860-10064955,
10065045-10065122,10066049-10066139,10066224-10066315,
10066433-10066560,10067421-10067495,10067670-10067850
Length = 669
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 168 KNQKFFSTYFFYNYLYISTTQ 106
+N ++F FFY+YLY S Q
Sbjct: 229 QNLRYFHCLFFYSYLYFSLEQ 249
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3
Query: 292 FQRLNNILEFLIINGIFLLHCI*LLY-EYIFIYTYFK 185
F+R++N L++ ++N L H +LY YI++ T+ K
Sbjct: 377 FKRIHNQLDWELVNNPSLEHVRNILYLSYIYLPTHLK 413
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 379 SGHNDNIYPLGRLIAAEGRPRTSVLPSGGFQ 287
SG ND + +LI E +P LP GG Q
Sbjct: 21 SGENDERQQILQLIIEEKQPEILELPGGGIQ 51
>10_06_0080 + 10441055-10443856
Length = 933
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 292 FQRLNNILEFLIINGIFLLHCI*LLY-EYIFIYTYFK 185
F+R+ N L++ +IN L H +LY YI++ T+ K
Sbjct: 398 FRRIQNQLDWELINNPSLEHVRNILYLSYIYLPTHLK 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,713,939
Number of Sequences: 37544
Number of extensions: 231855
Number of successful extensions: 399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -