Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N18
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    29   0.63 
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.1  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    26   3.4  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   3.4  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   5.9  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   5.9  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    25   7.7  

>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 487 PKSSLFFYPWSSFKLLCQVL 546
           P++S FFYP SSFK +C  L
Sbjct: 257 PEASPFFYPDSSFKNVCPAL 276


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +2

Query: 14  VFSITESIGR----YQDSNLRPLTRYPTALRIAPSSLTWFKLTIRILF*NILILKVTQT* 181
           VF   E++G+    Y+ S L+ L      L + PS++    L I + F  +++ K T   
Sbjct: 27  VFQTVENVGKSFEKYETSFLKSLFNGNLGLSL-PSAINILTLIIVLYFSLVIVNKTTSIA 85

Query: 182 MKLYFTLAV 208
           + L+ TLAV
Sbjct: 86  LALFKTLAV 94


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 335 ICQ*NCFE*DFIQNFMSLIFFYAEP*LFS 421
           IC   C+   F Q + +L+FFY  P L S
Sbjct: 141 ICMNGCYS-SFYQTWYTLLFFYIPPCLLS 168


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 214 ALRLSLRNTLCNFFIRNPNYFAKF 285
           +L LS+RN +C  + RNP  +  F
Sbjct: 186 SLYLSIRNGICYLWHRNPTLYVSF 209


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 270 LFCKIYFFATNMKQRCFS*IQIFASKTALNRIL 368
           LF   + FA+N+ +RC S I     +  LN+I+
Sbjct: 618 LFLSCHKFASNVVERCISYISDVDRRRILNKII 650


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 89  VRSDTASMDAGSNPDIGLCFR 27
           VR+D A  D G NPD   CFR
Sbjct: 643 VRNDNARFDCGFNPD---CFR 660


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 334 YLPVKLL*IGFYSEFHEFD 390
           Y  V+L+   FYSE HEFD
Sbjct: 571 YTKVQLITPEFYSEHHEFD 589


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 23  ITESIGRYQDSNLRPLTRYPTALRIAPSSLTWFKLTIRI 139
           I + + ++ D N  P ++  + L I+  S+TW +   RI
Sbjct: 293 IDDILQKFLDDNKIPWSKKGSVLEISTKSITWSRKARRI 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,984
Number of Sequences: 5004
Number of extensions: 41877
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)