Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N17
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    30   0.18 
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    30   0.18 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    29   0.23 
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    28   0.54 
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    27   0.94 
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   2.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   2.9  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   3.8  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   5.0  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   5.0  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   6.7  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    24   8.8  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    24   8.8  

>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 142 EIEKQ--FVEIIKQVQE--NFKPDNVKKQFNNMVDDFNKFMSSMNPN 270
           ++ KQ  F  IIK  ++  N K D +K   NN+  +F+KF  S  P+
Sbjct: 21  KVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 67


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 142 EIEKQ--FVEIIKQVQE--NFKPDNVKKQFNNMVDDFNKFMSSMNPN 270
           ++ KQ  F  IIK  ++  N K D +K   NN+  +F+KF  S  P+
Sbjct: 41  KVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 87


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 142 EIEKQ--FVEIIKQVQE--NFKPDNVKKQFNNMVDDFNKFMSSMNPN 270
           ++ KQ  F  I+K  ++  N K D +K   NN+  +F+KF  S  P+
Sbjct: 21  KVNKQNLFTNIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 67


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 28.3 bits (60), Expect = 0.54
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 204 IVWFEVFLHLFYNFDKLLFNFAKRVAGACCFGVAFHSSSDVI 79
           +  F   L L Y  +K LF  AKR    CC    F   +DV+
Sbjct: 15  VAQFREALALHYTNEKELFEQAKRCLNICCGSNNFAKRNDVL 56


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 157 FVEIIKQVQE--NFKPDNVKKQFNNMVDDFNKFMSSMNPN 270
           F   IK  ++  N K + +K+  N++  +F+KF +S  PN
Sbjct: 57  FTNTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSYYPN 96


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 73  SAYHVT*XVKRDAEAASTGNAFSEIEKQFVEIIKQVQENFKPDNVKKQFNNMVD 234
           +A  +T  V  D   +S     S+IEK +++  K   +NFKP   KK + ++VD
Sbjct: 278 AANRITDYVDSDLSESSMKEKQSKIEK-YMKSDKS-SKNFKPPFQKKSWEDLVD 329


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 106 DAEAASTGNAFSEIEKQFVEIIKQVQENFKPDNVKKQFNNMVDDFNKFM 252
           D+E   TG A     +  +   K    +F P N+  QF N+ + F  F+
Sbjct: 72  DSELDDTGEAKRWFPRNKIRTAKYTPIDFIPKNIFLQFQNVANLFFLFL 120


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 181 QENFKPDNVKKQFNNMVDDFNKFMS 255
           QENF  DN+ +  +N V++   F S
Sbjct: 438 QENFDSDNLSESLDNSVENLTVFPS 462


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 206 TLSGLKFSCTCFIISTNCFSISLNALPVLAASA 108
           TLSGL   C   +I   C +  ++A    AASA
Sbjct: 478 TLSGLATGCGILLIFLQCLNYLIDAYLFRAASA 510


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 203  LSGLKFSCTCFIISTNCFSISLNALPVLAASASRFTXQ 90
            L GLK  C  F  S+N  ++  ++L  +  +  +FT +
Sbjct: 968  LEGLKIYCLPFFSSSNNLAVITSSLAKIEQTVEQFTEE 1005


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 162 DKLLFNFAKRVAGACCFG 109
           + LL + AK  AGACC G
Sbjct: 330 EPLLISTAKAAAGACCGG 347


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 5   EAHKKSCGKRLQ 40
           + HK+ CGKRLQ
Sbjct: 167 QTHKEDCGKRLQ 178


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 127 GNAFSEIEKQFVEIIKQVQENFKPDNVKKQFNNMVDDF 240
           G      E    E  K+ +    PD+VKK FN+ +  F
Sbjct: 463 GQELDSKEALVTEFKKRTESLSMPDHVKKVFNDELSKF 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,923
Number of Sequences: 5004
Number of extensions: 18657
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)