Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N17
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37139-11|CAO82010.1| 487|Caenorhabditis elegans Hypothetical p... 28 3.4
Z34799-9|CAO82035.1| 487|Caenorhabditis elegans Hypothetical pr... 28 3.4
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 28 3.4
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 28 3.4
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 27 4.4
U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical pr... 27 4.4
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF016684-11|AAB66215.1| 555|Caenorhabditis elegans Hypothetical... 27 4.4
U97196-7|AAB52462.1| 141|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF039720-10|AAB96702.2| 282|Caenorhabditis elegans Hypothetical... 27 7.8
AF039720-9|AAK68360.2| 676|Caenorhabditis elegans Hypothetical ... 27 7.8
>Z37139-11|CAO82010.1| 487|Caenorhabditis elegans Hypothetical
protein F34D10.9 protein.
Length = 487
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +1
Query: 115 AASTGNAFSEIEKQFVEIIKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEA 279
AA+ N F++ ++ + + +++F+ K + N ++DFNKF++S + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226
>Z34799-9|CAO82035.1| 487|Caenorhabditis elegans Hypothetical
protein F34D10.9 protein.
Length = 487
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +1
Query: 115 AASTGNAFSEIEKQFVEIIKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEA 279
AA+ N F++ ++ + + +++F+ K + N ++DFNKF++S + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 272 ELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTNCFSI 144
++ +L+++++ S L+ C LT S + F+C F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 272 ELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTNCFSI 144
++ +L+++++ S L+ C LT S + F+C F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 326 NSYIGIIIISVFFYFGASELGFMLLINL 243
N+++ ++ + + YFG S++GF++ I L
Sbjct: 112 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 139
>U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical
protein T28D9.3c protein.
Length = 274
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 326 NSYIGIIIISVFFYFGASELGFMLLINL 243
N+++ ++ + + YFG S++GF++ I L
Sbjct: 113 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 140
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 326 NSYIGIIIISVFFYFGASELGFMLLINL 243
N+++ ++ + + YFG S++GF++ I L
Sbjct: 113 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 140
>AF016684-11|AAB66215.1| 555|Caenorhabditis elegans Hypothetical
protein F45C12.5 protein.
Length = 555
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 167 ISTNCFSISL--NALPVLAASASRFTXQVT**ADGQENN 57
+ T CFS SL N ++ + +FT + + ADGQ NN
Sbjct: 165 VDTICFSFSLKPNYQQIIVRNLDKFTVENSDGADGQLNN 203
>U97196-7|AAB52462.1| 141|Caenorhabditis elegans Hypothetical
protein B0207.8 protein.
Length = 141
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 136 FSEIEKQFV-EIIKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPN 270
FS + QF+ +II++VQ N K + VK + N ++ KF++ N N
Sbjct: 73 FSVVHLQFMYKIIREVQNNQKKNLVKFK-NGFCENTMKFVNFQNIN 117
>AF039720-10|AAB96702.2| 282|Caenorhabditis elegans Hypothetical
protein F33D11.9a protein.
Length = 282
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 260 MLLINLLKSSTMLLNCFLTLSGLKFSCTCFII 165
M ++ LL++S +L LT GL CT F++
Sbjct: 111 MRIVCLLETSLVLYGICLTNFGLAILCTAFVV 142
>AF039720-9|AAK68360.2| 676|Caenorhabditis elegans Hypothetical
protein F33D11.9b protein.
Length = 676
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 260 MLLINLLKSSTMLLNCFLTLSGLKFSCTCFII 165
M ++ LL++S +L LT GL CT F++
Sbjct: 505 MRIVCLLETSLVLYGICLTNFGLAILCTAFVV 536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,787,943
Number of Sequences: 27780
Number of extensions: 104798
Number of successful extensions: 421
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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