Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N17
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    26   0.16 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    26   0.16 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   1.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 290 FYFGASELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTNCFSISLN-ALPVLAA 114
           F+ G + +  MLLI  L  +  ++  F T   L+     FI+S   F I +   +P+L  
Sbjct: 56  FHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVI 115

Query: 113 SA 108
           S+
Sbjct: 116 SS 117


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 290 FYFGASELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTNCFSISLN-ALPVLAA 114
           F+ G + +  MLLI  L  +  ++  F T   L+     FI+S   F I +   +P+L  
Sbjct: 56  FHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVI 115

Query: 113 SA 108
           S+
Sbjct: 116 SS 117


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 169 IKQVQENFKPDNVKKQFNNMVDDFNKFMSSMN 264
           IK+    F P  VK +F N+ D   +    MN
Sbjct: 176 IKKHAVKFNPAKVKLRFENLFDGNKELGEQMN 207


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 159 KLLFNFAKRVAGACCFGVAFHSSSDVIS--RRPGK 61
           +L   F   V G+C FG+   S ++  S  RR G+
Sbjct: 176 ELTARFTTDVIGSCAFGIDMSSMTNENSEFRRMGR 210


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 269 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTN 156
           L   + +NL+  S    +  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASS 271


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 269 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTN 156
           L   + +NL+  S    +  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASS 271


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 269 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTN 156
           L   + +NL+  S    +  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASS 271


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 269 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTN 156
           L   + +NL+  S    +  + L G  F+C  F+++++
Sbjct: 302 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASS 339


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 269 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTN 156
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASS 271


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 269 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTN 156
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASS 271


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 269 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTN 156
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASS 271


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 269 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFIISTN 156
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 302 LSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASS 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,697
Number of Sequences: 438
Number of extensions: 1413
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)