Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N16
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   145   1e-35
Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    27   6.9  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  145 bits (351), Expect = 1e-35
 Identities = 63/111 (56%), Positives = 84/111 (75%)
 Frame = +1

Query: 10  EIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 189
           ++ EK+P  +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+A  I 
Sbjct: 69  QVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIH 128

Query: 190 IIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYKRPSTYF 342
           I+KV+ +KA   +R  +K FH +KI FPLP RV + K L+ F   R +T+F
Sbjct: 129 ILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 130 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL 276
           VT  +++ GAR+     + Q  K  VI A+A        +H  ++G P+
Sbjct: 143 VTGSFKERGARYALSKMAEQFKKAGVIAASAGNHALALSYHGQQMGIPV 191


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +1

Query: 31  VKIKNFGIWLRYESR---SGVHNMYR 99
           V +K+FGI LRY S+   S VH  Y+
Sbjct: 121 VAVKDFGILLRYASKLHISSVHTCYK 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,676,455
Number of Sequences: 27780
Number of extensions: 188485
Number of successful extensions: 449
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)