Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N16
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.33 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 123 TYTQVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNF 10
           TYT  T+  ++IV      +TQ D ++ N  + + + F
Sbjct: 500 TYTYDTICQLNIVHYGIGFITQSDIELANTFKAIIYGF 537


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/29 (24%), Positives = 13/29 (44%)
 Frame = +1

Query: 7   GEIPEKSPVKIKNFGIWLRYESRSGVHNM 93
           GE   +   K+    +W  Y +  G H++
Sbjct: 421 GEKAARMQAKVNRQPVWFYYYTYKGAHSI 449


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/29 (24%), Positives = 13/29 (44%)
 Frame = +1

Query: 7   GEIPEKSPVKIKNFGIWLRYESRSGVHNM 93
           GE   +   K+    +W  Y +  G H++
Sbjct: 421 GEKAARMQAKVNRQPVWFYYYTYKGAHSI 449


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/19 (26%), Positives = 10/19 (52%)
 Frame = -3

Query: 261 LAGVELLNLWSTTCRCLDY 205
           ++ +  +N+W   C C  Y
Sbjct: 357 VSNLTAMNVWDGVCMCFIY 375


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/19 (26%), Positives = 10/19 (52%)
 Frame = -3

Query: 261 LAGVELLNLWSTTCRCLDY 205
           ++ +  +N+W   C C  Y
Sbjct: 326 VSNLTAMNVWDGVCMCFIY 344


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/19 (26%), Positives = 10/19 (52%)
 Frame = -3

Query: 261 LAGVELLNLWSTTCRCLDY 205
           ++ +  +N+W   C C  Y
Sbjct: 377 VSNLTAMNVWDGVCMCFIY 395


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/19 (26%), Positives = 10/19 (52%)
 Frame = -3

Query: 261 LAGVELLNLWSTTCRCLDY 205
           ++ +  +N+W   C C  Y
Sbjct: 326 VSNLTAMNVWDGVCMCFIY 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,446
Number of Sequences: 438
Number of extensions: 2373
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)