Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N14
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical
           protein B0491.4 protein.
          Length = 454

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 293 ELFEICTPSTFRLSVLLFILLFPVSLFMMCQTVLTLFLDTRT-LFPKNFALASIHTRLKV 117
           ++ ++C  +  ++S +   LLFPV+L         LF D RT ++ K F   S+H +   
Sbjct: 255 QVMQVCVRAEKQMSTVRVALLFPVTLATYVMLASPLFGDLRTQIYVKLF---SLHIQTLC 311

Query: 116 FEYSLT 99
           F Y  T
Sbjct: 312 FLYLCT 317


>Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 442 AGDILKAFKQLNLKHTQDIWGMSVMVLQTMIVNISPYLANI-FNGC 576
           AGDI+   K L  +   D++G+   ++ T+   + PY   I F+ C
Sbjct: 440 AGDIICTMKMLLHRWDMDVYGVMESIIDTIKAVLKPYQRRILFDRC 485


>Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 442 AGDILKAFKQLNLKHTQDIWGMSVMVLQTMIVNISPYLANI-FNGC 576
           AGDI+   K L  +   D++G+   ++ T+   + PY   I F+ C
Sbjct: 440 AGDIICTMKMLLHRWDMDVYGVMESIIDTIKAVLKPYQRRILFDRC 485


>Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical
           protein C15H11.3 protein.
          Length = 628

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 276 YSVNVQIKCIIIYFTISCFFIYDVPDG 196
           Y  N QI+ ++  F  S F  YD PDG
Sbjct: 356 YYPNPQIRVLVEQFVTSYFDFYDGPDG 382


>AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical
           protein C03A7.13 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 217 KETGNSKIXXXXXXXXVDGVHISNSSEVATVFQDY-FTNIPLEVTKHITSSPQGAALLLN 393
           K  GNSK         ++G   S  S +A+ F+D  FT    +V   I ++   +AL   
Sbjct: 65  KGHGNSKASKFYELESINGSDWSKLSHLASPFEDRPFTFNGFQVYNKIGNALCESALADQ 124

Query: 394 NLSAPINSKFY 426
           NL A + S+ Y
Sbjct: 125 NLHAFLTSRQY 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,806
Number of Sequences: 27780
Number of extensions: 232438
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)