Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N14
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    24   1.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   8.9  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 271 GVHISNSSEVATVFQDYFTNIPLEVTKHIT 360
           G++ SNSS V T+F    T + L + K  T
Sbjct: 270 GIYGSNSSTVGTIFGYQGTYVNLVIVKVFT 299


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 526 FEEPLPTFPI 497
           FEEPLP+ P+
Sbjct: 471 FEEPLPSLPL 480


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 207 VPDGFDLIFRHENFIS 160
           VPD  +L+F + N+I+
Sbjct: 615 VPDSVELLFINNNYIN 630


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 61  RKSLTTNSSFHAYVREYSKTFKRVCIEAKA 150
           RKSL+      +  R YSK F    ++ ++
Sbjct: 8   RKSLSQRKIIRSRSRRYSKRFSSSIVDRRS 37


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 401 LKLLRSNAAPWGDEVI 354
           ++L RSN  PW ++ +
Sbjct: 562 IELSRSNPTPWSEDAM 577


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 271 GVHISNSSEVATVF 312
           G++ SNSS V T+F
Sbjct: 270 GIYGSNSSTVGTIF 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,919
Number of Sequences: 438
Number of extensions: 2774
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)