Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N12
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 181 3e-47
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 180 4e-47
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 180 4e-47
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 112 1e-26
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 106 1e-24
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 88 4e-19
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 44 6e-06
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 7e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 36 0.001
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 36 0.002
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.011
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.079
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.14
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 0.42
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 0.42
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 0.56
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 0.97
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 26 1.7
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 25 2.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 2.2
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 3.0
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 3.0
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 5.2
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 24 6.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 6.8
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 23 9.0
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 23 9.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 23 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 181 bits (440), Expect = 3e-47
Identities = 85/95 (89%), Positives = 90/95 (94%)
Frame = +1
Query: 19 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 198
KAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEF
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEF 123
Query: 199 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 303
EAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT 158
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 180 bits (439), Expect = 4e-47
Identities = 84/95 (88%), Positives = 90/95 (94%)
Frame = +1
Query: 19 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 198
KAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEF
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEF 123
Query: 199 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 303
EAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT 158
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 180 bits (439), Expect = 4e-47
Identities = 84/95 (88%), Positives = 90/95 (94%)
Frame = +1
Query: 19 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 198
KAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEF
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEF 123
Query: 199 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 303
EAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT 158
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 112 bits (270), Expect = 1e-26
Identities = 51/104 (49%), Positives = 70/104 (67%)
Frame = +1
Query: 16 TKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 195
T ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GE
Sbjct: 294 TSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE 353
Query: 196 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 327
FEAG + GQTREHA+LA T G+ L+V +NKMD +SE R
Sbjct: 354 FEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 397
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 106 bits (254), Expect = 1e-24
Identities = 50/94 (53%), Positives = 63/94 (67%)
Frame = +1
Query: 16 TKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 195
T+ ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V +
Sbjct: 233 TEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN 292
Query: 196 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 297
FE G +NGQTREHA L LG+ +++V VNK+D
Sbjct: 293 FERGFLENGQTREHAYLLRALGISEIVVSVNKLD 326
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 87.8 bits (208), Expect = 4e-19
Identities = 45/99 (45%), Positives = 62/99 (62%)
Frame = +1
Query: 25 ERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 204
E+ RGITI A ++ET + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 97 EKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP- 155
Query: 205 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 321
QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 156 ------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIE 188
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 44.0 bits (99), Expect = 6e-06
Identities = 33/92 (35%), Positives = 46/92 (50%)
Frame = +1
Query: 22 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 201
AER+RGITI+ A F + +ID PGH DF + + D AV I+ +
Sbjct: 73 AERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGS 127
Query: 202 AGISKNGQTREHALLAFTLGVKQLIVGVNKMD 297
AG+ QT+ A G+ ++I VNKMD
Sbjct: 128 AGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 7e-04
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 85 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 264
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 265 KQLIVGVNKMD 297
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 36.3 bits (80), Expect = 0.001
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 37 GITIDIALWK--FETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 192
GIT I + F+ G ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 35.5 bits (78), Expect = 0.002
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 19 KAERERGITIDIA----LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 186
+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A
Sbjct: 99 EVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDAS 158
Query: 187 TG 192
G
Sbjct: 159 QG 160
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.1 bits (72), Expect = 0.011
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 237
Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.079
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 192
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.14
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 94 IIDAPGHRDFIKNMITGTSQADCAVLIV 177
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 0.42
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 177
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 0.42
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 177
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 0.56
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 31 ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 132
E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 68 EKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 0.97
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 97 IDAPGHRDFIKNMITGTSQADCAVLIV 177
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 168 HGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELP 61
+ AV DH L + ++ + D ++FAG+++P
Sbjct: 28 NAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVP 63
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 2.2
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 19 KAERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMIT 141
K E++ G++ID + F+ G + + PG+ DF+ N ++
Sbjct: 16 KYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 198 EFTSTSGDNKHGAVSLRRSSDHVLDE 121
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 171 KHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPE 58
K G V + + V+DE ++ ++D+G + AG ++ E
Sbjct: 236 KRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFE 273
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 3.0
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 42 HHRY-CSLEVRNRQILCHHH 98
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 5.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 108 WTQRFHQEHDHWN 146
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +1
Query: 37 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 183
G D ++K + + + + PGH D I+++ S LI A
Sbjct: 189 GCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 6.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 309 WLSGVHFVYSYNQLLDSECE 250
W++G H Y N L+S CE
Sbjct: 1214 WINGKHGSYCENNELNSGCE 1233
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 88 VTIIDAPGHRDFIKN 132
+T++D PG DFI N
Sbjct: 91 LTVLDTPGFGDFIDN 105
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 66 VRNRQILCHHHRRSWTQRFHQEHD 137
+R R +LCH + + RF++ D
Sbjct: 572 LRTRAMLCHIYHEALQNRFYKARD 595
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 183 WYW*IRSRYLKERTNA*TRSARFHTRSQATD 275
W + +RYL + + T S+ F T ++ATD
Sbjct: 470 WVTEVFTRYLGDDSTPVTSSSIFSTATEATD 500
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,398
Number of Sequences: 5004
Number of extensions: 22321
Number of successful extensions: 101
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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