Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N11
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 29 0.41
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.71
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 1.2
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 1.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 3.8
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.8
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 3.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 5.0
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 6.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.8
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 8.8
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 29.1 bits (62), Expect = 0.41
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 297 LLVSNLHRSRIFRSVQHQQFHRKLTAHHWAQEWRYQQTMFLRLHHEDQLITHSIDLSKAI 476
+LV+N RS++F ++ +R LT H L+ DQ+++ DLS
Sbjct: 117 ILVNNYSRSQLFNHSLNESKNRDLTEQH-------PFVTLDELNSNDQVLSSFGDLSSTF 169
Query: 477 EKPNRL 494
E PN +
Sbjct: 170 EMPNNI 175
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 0.71
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 281 SSTPAPASIKPTQVQNLPQRSTPTVPPEAHSSSLGTGVAIPADDVPQT 424
+S SI PT P TPTVPP + S+ L T + VP T
Sbjct: 391 TSCTTSTSIPPTGNSTTPV--TPTVPPTSSSTPLTTTNCTTSTSVPYT 436
Score = 25.4 bits (53), Expect = 5.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 242 SIDGKRTYLNLFDSSTPAPASIKPTQ-VQNLPQRSTPTVPPEAHSSSLGTGVAIPADDVP 418
S D L +S SI PT +L TPTVPP + SS T + IP
Sbjct: 157 STDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSS---TSIPIPPTSTS 213
Query: 419 QT 424
T
Sbjct: 214 ST 215
Score = 25.4 bits (53), Expect = 5.0
Identities = 25/88 (28%), Positives = 34/88 (38%)
Frame = +2
Query: 116 TVSAIQGPGEKGGSVHIQHVNPLSHGEHEDIIVSPSGEQGFVSIDGKRTYLNLFDSSTPA 295
T ++I G S I P + I + P+ S D + L +S
Sbjct: 231 TSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTS---STDTNSSPLPTTSTSCTT 287
Query: 296 PASIKPTQVQNLPQRSTPTVPPEAHSSS 379
SI PT P TPTVPP + SS+
Sbjct: 288 STSIPPTGNSTTPV--TPTVPPTSTSST 313
Score = 24.6 bits (51), Expect = 8.8
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 281 SSTPAPASIKPTQ-VQNLPQRSTPTVPPEAHSSSLGTGVAIPADDVPQT 424
+S SI PT +L TPTVPP + SS T + IP T
Sbjct: 113 TSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSS---TSIPIPPTSTSST 158
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 188 HGEHEDIIVSPSGEQGFVSIDGKRTYLNLFDSSTPAPASIKPTQVQNLPQRSTPT-VPPE 364
HG+ + ++ + ++ V++ + T F +TPA PT N P T +PP
Sbjct: 185 HGDIAERKLAAAAKKNKVAVTPQSTLPPGFSPATPA-----PTSAANTPATIAATSIPPV 239
Query: 365 AHSSSLGTGVAIPADDVP 418
+ +G A+P +P
Sbjct: 240 PNVPLVGATTAVPPLSIP 257
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 27.1 bits (57), Expect = 1.6
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -3
Query: 237 KPCSPEGETIISSCSP*LKG-FTCCMWTEPPFSPGPC--IADTVTSNI 103
KPC + ET S S KG FTC W SP PC +AD T++I
Sbjct: 376 KPCFNK-ETKGSIFSKENKGPFTCNPWGAKKVSPPPCEVLADLNTASI 422
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.2
Identities = 24/96 (25%), Positives = 33/96 (34%)
Frame = +2
Query: 137 PGEKGGSVHIQHVNPLSHGEHEDIIVSPSGEQGFVSIDGKRTYLNLFDSSTPAPASIKPT 316
PG K ++ P S E + SG + G T TP A+ KPT
Sbjct: 532 PGGKKSAIEAAAPIPTSADTVESKHAAGSGSATTIPSPGSAT-----TKPTPGSATTKPT 586
Query: 317 QVQNLPQRSTPTVPPEAHSSSLGTGVAIPADDVPQT 424
V + + T P + + T AD QT
Sbjct: 587 PVSATEEHAAGTTKPAPAAGATATAENETADGKAQT 622
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 179 PLSHGEHEDIIVSPSGEQGFVSIDGKRTYLNLFDSSTPAPASIKPTQVQNLPQRSTPTVP 358
P SH I SP+ +I+ + T L+ DS+ P P ++K + +P ++ P+ P
Sbjct: 117 PQSHPNVTVISASPAR-----AIEQQPTILSSTDSNIPRPGTVKSSASPFVPNQN-PSAP 170
Query: 359 P 361
P
Sbjct: 171 P 171
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 284 STPAPASIKPTQVQNLP-QRST--PTVPPEAHSSSLGTGVAIPADDVPQT 424
ST +P + P+ ++ P ST P+ P A+SSS G IPA T
Sbjct: 367 STTSPPPLTPSTSRDYPFSASTISPSTPFSAYSSSHGIHQRIPASTPTNT 416
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 3.8
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 143 EKGGSVHIQHVNPLSHGEHEDIIVSPSGEQGFVSIDGKRTYLNLFDSSTPAP 298
EK S I NP + E+ D I + G Q S +GK DSS+ AP
Sbjct: 199 EKDASRSIDSSNPSA--EYRDDINNTFGSQTVSSANGKEVPQTSEDSSSQAP 248
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 288 VELSKRLRYVLLPSIETKPCSPEGETIISSC 196
++ S L Y+ ++ET P SPE I+++C
Sbjct: 410 LQKSVPLSYLAHETLETNPYSPESWCILANC 440
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 196 TRRYNRLSLWRTRFRFYRRQKDVPQSLRQLDSCT 297
T + N L T F+ ++ + QSL QL CT
Sbjct: 1360 THQINALESVHTSFQHFKLFTNTKQSLNQLKDCT 1393
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 286 RAVEEIEVRPFAVYRNETLFSRGRDDYIF 200
R+V + EVR + Y ++ L SRG + F
Sbjct: 765 RSVSDAEVRRYEAYAHQLLTSRGLTGFQF 793
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 329 LPQRSTPTVPPEAHSSSLGTGVAIPADDVPQ 421
L STP P H SL T V I D+P+
Sbjct: 742 LSSSSTPMTPLNHHFFSLATCVLIGVFDLPE 772
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 146 KGGSVHIQHVNPLSHGEHEDIIVSPSGEQG 235
+GG +HV+ L H E +II+ S G
Sbjct: 569 RGGPRSAEHVDILGHSELNEIILKVSSGHG 598
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,618
Number of Sequences: 5004
Number of extensions: 48158
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -