Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N11
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0237 - 6674145-6674354,6674458-6675087,6675135-6675541,667... 32 0.24
11_05_0094 - 18995278-18995757,18995843-18996188,18996774-189968... 31 0.41
02_04_0173 - 20604996-20605284,20605465-20605565 30 1.3
02_02_0168 + 7364410-7365153 30 1.3
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 2.9
04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251 29 2.9
05_06_0059 - 25264704-25266032 23 3.5
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 28 3.8
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690... 28 5.1
11_06_0610 - 25449085-25453284 27 6.7
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 27 6.7
04_03_0622 + 18106448-18106508,18107431-18108281 27 6.7
03_06_0562 + 34732027-34733121 27 6.7
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 27 8.8
05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425 27 8.8
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 27 8.8
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 27 8.8
03_02_0368 + 7840665-7841975 27 8.8
>03_02_0237 -
6674145-6674354,6674458-6675087,6675135-6675541,
6677206-6677253,6677630-6677702
Length = 455
Score = 32.3 bits (70), Expect = 0.24
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 287 TPAPASIKPTQVQNLPQRSTPTVPPEAHSSSLGTGVAIPADDVPQT 424
T APA++ P VQN PQ S P ++ G VPQT
Sbjct: 374 TAAPATVTPVTVQNTPQPSRGMTPTGYCVTAAGVPGTTQGQQVPQT 419
>11_05_0094 -
18995278-18995757,18995843-18996188,18996774-18996837,
18996924-18997078,18997377-18997618
Length = 428
Score = 31.5 bits (68), Expect = 0.41
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 172 RKSFKSRGTRRYNRLSLWRTRFRFYRRQKDVPQSL 276
R F+ GT+ YN L WRTR+ R KD+ +L
Sbjct: 215 RYGFEISGTQVYNHLRKWRTRWVRITRLKDISGAL 249
>02_04_0173 - 20604996-20605284,20605465-20605565
Length = 129
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 360 GGTVGVERCGRFWTCVGLILAG 295
GGTVGV R G +WT VG +G
Sbjct: 17 GGTVGVRRGGTWWTGVGSSTSG 38
>02_02_0168 + 7364410-7365153
Length = 247
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 245 IDGKRTYLNLFD--SSTPAPASIKPTQVQNLPQRSTPTVPPEAHSSSL 382
+ G LN D +S P PAS P VQ R+ PP+ SSL
Sbjct: 92 VKGPAAVLNFPDMAASLPRPASASPRDVQAAAARAAAMEPPQPPPSSL 139
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 272 LFDSSTPAPASIKPTQVQNLPQRSTPTVPP 361
L + P PASI PT LP P PP
Sbjct: 95 LLPTPPPPPASISPTPAPPLPPPPAPAPPP 124
>04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251
Length = 364
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +2
Query: 161 HIQHVNPLSHG----EHEDIIVSPSGEQGFVS 244
H QH+N +HG H DI+V S E+G V+
Sbjct: 172 HAQHINAHTHGGHTHSHGDIVVCGSPEEGSVA 203
>05_06_0059 - 25264704-25266032
Length = 442
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 95 YGEIFDVTVSAIQGPGEKGGSVHIQHVNPLSHGEHEDIIVSPSGEQGFVSID 250
+G D+ + +G V+ +PL+ + +D +V SGE V+I+
Sbjct: 236 HGAALDIDIDIPRGGAISPLVVNKAQSSPLAKNDDDDELVDISGEASPVAIE 287
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +2
Query: 311 PTQVQNLPQRSTPTVPPEAHSSSLGTGVAIPADD 412
P ++N P+ + ++ P + SLG DD
Sbjct: 283 PVAIENFPEATKSSISPSSDEPSLGNYSGDDDDD 316
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 257 RTYLNLFDSSTPAPASIKPTQVQNLPQRSTPTVPPEAHSSSL 382
R + L +S T AP + K N+P RST T P AH S+
Sbjct: 99 RINVQLNNSHTAAPQA-KQQDSDNIPLRSTTTEDPLAHIKSV 139
>01_01_0880 +
6903535-6903932,6904931-6905022,6905601-6905680,
6905885-6905926,6906001-6906128,6906530-6906710,
6906801-6906979,6907469-6907717,6907950-6908193
Length = 530
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 266 LNLFDSSTPAPASIKPTQVQNLPQRSTPTVPPEAHSSSLGTGVAIP 403
L S +P+P S P+ P + P + P SSS A P
Sbjct: 26 LPFLPSPSPSPTSASPSPSPPAPHLAVPLILPITSSSSASAAAASP 71
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 290 PAPASIKPTQVQNLPQRSTPTVPPEA 367
PAP S+ P V++LP + ++PP A
Sbjct: 1283 PAPVSLPPPVVKSLPPPAPVSLPPPA 1308
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 287 TPAPA-SIKPTQVQNLPQRSTPTVPPEAHSS 376
TP P+ S +PT P +++PT PP+ H+S
Sbjct: 393 TPPPSPSQQPTLPAPQPVQASPTSPPKQHAS 423
>04_03_0622 + 18106448-18106508,18107431-18108281
Length = 303
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 506 CRSSQSVRLFYSLAEVYGVGDELVFVVESEEHRLLVSPLLCPMM 375
C++ +S+ L+ E Y VGD+++F + L L CP +
Sbjct: 258 CKNLKSISLWLK-PEHYNVGDDIIFRTGFTDESLKALALNCPFL 300
>03_06_0562 + 34732027-34733121
Length = 364
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 44 ERPEASVITAPEP*IPGYGEIFDVTVSAIQGPGEKGGSVHIQHVNPLSH--GEHEDIIVS 217
+ PEA +AP +P + DV +A P ++GG + ++ ++ EHE +
Sbjct: 201 DHPEAPASSAPRRTLPASEQHVDVDAAAASEP-DQGGYLSTDQLDSVAAFVQEHEAFVQE 259
Query: 218 PSGEQGF 238
G++ F
Sbjct: 260 HEGDEEF 266
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 124 SYTRSWREGWFSPHTARKSF 183
+Y R WRE WFS H S+
Sbjct: 57 NYGRGWRERWFSLHDGVLSY 76
>05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425
Length = 604
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 333 GRFWTCV-GLILAGAGVELSKRLRYVLLPSIETKPCSP 223
GRFWT + G + G + + LLPS+ PC+P
Sbjct: 89 GRFWTIIAGSVFYQLG--MLALVASALLPSLRPAPCAP 124
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 84 HGSGAVITDASGLSGRYLDPWGLK 13
H +GAV T ASG+ R++ P+G K
Sbjct: 47 HDAGAVSTGASGVPTRFVWPYGGK 70
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 293 APASIKPTQVQNLPQRSTPTVPPEAH 370
AP S P + P+ P PPEAH
Sbjct: 160 APTSAAPPSPAHAPELKKPPPPPEAH 185
>03_02_0368 + 7840665-7841975
Length = 436
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 218 PSGEQGFVSIDGKRTYLNLFDSSTPAPASIKPTQVQNLPQRSTPTVPPEAHSSSLGTG 391
P+ VS R L ++P P ++ + +L +RSTP P S+S G G
Sbjct: 61 PAAYVAAVSCSDCRFKQRLHAPASPGPGAVIRSLFVSLTRRSTPRSSPSPTSASGGDG 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,737
Number of Sequences: 37544
Number of extensions: 365351
Number of successful extensions: 1315
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -