Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N11
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70783-11|CAA94860.2| 782|Caenorhabditis elegans Hypothetical p... 30 0.85
U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical p... 30 1.1
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 29 1.5
AL132860-14|CAB60497.1| 619|Caenorhabditis elegans Hypothetical... 29 1.5
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 29 2.0
AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical... 29 2.0
AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical ... 29 2.0
U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical ... 28 3.4
Z82071-1|CAB04917.1| 209|Caenorhabditis elegans Hypothetical pr... 28 4.5
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 28 4.5
AL117195-29|CAB55017.2| 204|Caenorhabditis elegans Hypothetical... 28 4.5
AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical ... 28 4.5
Z68120-1|CAA92199.3| 711|Caenorhabditis elegans Hypothetical pr... 27 6.0
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 27 6.0
AL031633-25|CAI06057.1| 354|Caenorhabditis elegans Hypothetical... 27 6.0
AL031633-2|CAD60426.1| 388|Caenorhabditis elegans Hypothetical ... 27 6.0
AL031633-1|CAA21019.3| 386|Caenorhabditis elegans Hypothetical ... 27 6.0
AF218866-1|AAF67103.1| 711|Caenorhabditis elegans transmembrane... 27 6.0
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ... 27 6.0
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 27 7.9
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 7.9
AL110484-28|CAB54395.2| 419|Caenorhabditis elegans Hypothetical... 27 7.9
>Z70783-11|CAA94860.2| 782|Caenorhabditis elegans Hypothetical
protein ZK856.12 protein.
Length = 782
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 275 FDSSTPAPASIKPTQVQNLPQRSTPTVPPEA 367
F S + I P QN+ + STPTVPP +
Sbjct: 410 FSSFESTKSDISPQNNQNVEETSTPTVPPNS 440
>U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical
protein F55G1.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 249 SIETKPCSPEGETIISSCSP*LKGFTCCMWTEPPFSPGPCIADTVTSN 106
++ + C+ + +C+ G C M T P SP PC+ + V S+
Sbjct: 69 TLSNQQCNMVNDIPTCTCAVGYTGTDCTMLTSDPCSPQPCLQNGVCSS 116
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 302 SIKPTQVQNLPQRSTPTVPPEAHSSSLGTGVAIPADDVPQ 421
+I P+Q+ + Q T+PP + + G+ IPA VPQ
Sbjct: 107 NIDPSQICPVDQMGMWTLPPPTGPNGMRYGIPIPAPLVPQ 146
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 302 SIKPTQVQNLPQRSTPTVPPEAHSSSLGTGVAIPADDVPQ 421
+I P+Q+ + Q T+PP + + G+ IPA VPQ
Sbjct: 107 NIDPSQICPVDQMGMWTLPPPTGPNGMRYGIPIPAPLVPQ 146
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 302 SIKPTQVQNLPQRSTPTVPPEAHSSSLGTGVAIPADDVPQ 421
+I P+Q+ + Q T+PP + + G+ IPA VPQ
Sbjct: 107 NIDPSQICPVDQMGMWTLPPPTGPNGMRYGIPIPAPLVPQ 146
>AL132860-14|CAB60497.1| 619|Caenorhabditis elegans Hypothetical
protein Y56A3A.16 protein.
Length = 619
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +2
Query: 164 IQHVNPLSHGEHEDIIVSPSGEQGFVSIDGKRTYLNLF-DSSTPAPASIKPTQVQNLPQR 340
I + S GEHE + + + V+ D ++ D + P + + P
Sbjct: 29 ISFTSSCSSGEHEGYVTARDTTKNRVNGDSVNDLISFEEDLNLPGTSEENSLLSPDSPSS 88
Query: 341 STPTVPPEAHSSSLGTGVAI 400
STP PP+ S +L V +
Sbjct: 89 STPNFPPQYESQNLKESVIV 108
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 160 PHTARKSFKSRGTRRYNRLSLWRTRFRFYRRQKDVPQS 273
P+ ++ ++S + YN S + FYR+QK +P+S
Sbjct: 51 PYIPQRVYRSINSTLYNNQSFASSSRGFYRKQKPIPKS 88
>AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical
protein Y24D9A.1b protein.
Length = 487
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 112 RYRVSYT-RSWREGWFSPHTARKSFKSRGTRRYNRLSLWRTRFRFYRRQKDVPQSLRQLD 288
+Y++ T RS++E + KSRGT++ + + + R++ P+S+
Sbjct: 158 KYQIQATDRSFQETKKRAELRAEVEKSRGTKQMKKSGVTSSSSRYHNSSNSTPRSMNSAP 217
Query: 289 SCTC*YQTYTGPESSAAFNTNSSTGSSQ 372
+ + ++ SS A ++ +T +S+
Sbjct: 218 NSSRVSPSFMSSSSSKASTSHVTTNNSK 245
>AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical
protein Y24D9A.1a protein.
Length = 670
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 112 RYRVSYT-RSWREGWFSPHTARKSFKSRGTRRYNRLSLWRTRFRFYRRQKDVPQSLRQLD 288
+Y++ T RS++E + KSRGT++ + + + R++ P+S+
Sbjct: 158 KYQIQATDRSFQETKKRAELRAEVEKSRGTKQMKKSGVTSSSSRYHNSSNSTPRSMNSAP 217
Query: 289 SCTC*YQTYTGPESSAAFNTNSSTGSSQ 372
+ + ++ SS A ++ +T +S+
Sbjct: 218 NSSRVSPSFMSSSSSKASTSHVTTNNSK 245
>U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical
protein K06A1.6 protein.
Length = 937
Score = 28.7 bits (61), Expect = 2.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 366 LTAHHWAQEWRYQ 404
LTAHHW +WR++
Sbjct: 299 LTAHHWVHKWRHE 311
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 278 DSSTPAPASIKPTQVQNLPQRSTPTVPPEAHSSSLGTGVA-IPADDVPQT 424
+ P A P Q+Q + + P +A SSS G+G + + DDV +T
Sbjct: 45 EQKEPKAAEPTPKQLQKVEASTPQATPSKAASSSAGSGKSMLFGDDVKKT 94
>AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical
protein W05E7.2 protein.
Length = 334
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 259 PFAVYRNETLFSRGRDDYIFVFPVT*RIY 173
PF VY N+ +R RD+ F+FP+T Y
Sbjct: 41 PFYVYVNKV--NRKRDEAAFIFPITNHFY 67
>Z82071-1|CAB04917.1| 209|Caenorhabditis elegans Hypothetical
protein W05B5.1 protein.
Length = 209
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 275 FDSSTPAPASIKPTQVQNLPQRSTPTVPPEAHSSSL 382
F S P A PT+ Q+ Q +TP PP H S L
Sbjct: 114 FPPSRPGSAQNTPTKQQHFTQAATP--PPTNHESPL 147
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 267 SISSTARLLHLLVSNLHRSRIFRSVQHQQFHR 362
SI R H ++ +LH +RIF++V+ + +R
Sbjct: 181 SIGHLKRENHRMIDSLHHARIFQAVEQETLNR 212
>AL117195-29|CAB55017.2| 204|Caenorhabditis elegans Hypothetical
protein Y57A10A.14 protein.
Length = 204
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 230 QGFVSIDGKRTYLNLFD--SSTPAPASIKPTQVQNLPQRSTPTVP 358
QGFV++D + +N+FD ++P +S+ + L + P P
Sbjct: 5 QGFVTLDSNSSRINIFDVFDNSPTSSSLSDSDPSLLIEEEEPPNP 49
>AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical
protein R02F11.2 protein.
Length = 721
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 41 PERPEASVITAPEP*IPGYGEIFD---VTVSAIQGPGEKGGSVHIQHVNPLSH 190
PERPE +I A P P G +F + +A+ G E+ + + P +H
Sbjct: 132 PERPETCIILASHPEWPFDGNVFQNGTIPTAALFGCHERSMCSGTRCIEPYTH 184
>Z68120-1|CAA92199.3| 711|Caenorhabditis elegans Hypothetical
protein T24C2.1 protein.
Length = 711
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 278 DSSTPAPASIKPTQVQNLPQRSTPTV 355
+SST P S KPT ++N+ S PTV
Sbjct: 558 ESSTQTPNSTKPTSIRNV-THSVPTV 582
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 307 QTYTGPESSAAFNTNSSTGSSQ 372
+T GP SS+ F T+SS GSS+
Sbjct: 1579 KTTGGPPSSSVFGTSSSAGSSR 1600
>AL031633-25|CAI06057.1| 354|Caenorhabditis elegans Hypothetical
protein Y39A1A.1c protein.
Length = 354
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 107 FDVTVSA--IQGPGEKGGSVHIQHVNPLSHGEHEDIIV 214
+D T +A + PG K GSV I H+N L+ E + IV
Sbjct: 145 YDPTTAACYLAYPGFKTGSVQIMHLNALTARESKSPIV 182
>AL031633-2|CAD60426.1| 388|Caenorhabditis elegans Hypothetical
protein Y39A1A.1b protein.
Length = 388
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 107 FDVTVSA--IQGPGEKGGSVHIQHVNPLSHGEHEDIIV 214
+D T +A + PG K GSV I H+N L+ E + IV
Sbjct: 177 YDPTTAACYLAYPGFKTGSVQIMHLNALTARESKSPIV 214
>AL031633-1|CAA21019.3| 386|Caenorhabditis elegans Hypothetical
protein Y39A1A.1a protein.
Length = 386
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 107 FDVTVSA--IQGPGEKGGSVHIQHVNPLSHGEHEDIIV 214
+D T +A + PG K GSV I H+N L+ E + IV
Sbjct: 177 YDPTTAACYLAYPGFKTGSVQIMHLNALTARESKSPIV 214
>AF218866-1|AAF67103.1| 711|Caenorhabditis elegans transmembrane
protein RAM-5 protein.
Length = 711
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 278 DSSTPAPASIKPTQVQNLPQRSTPTV 355
+SST P S KPT ++N+ S PTV
Sbjct: 558 ESSTQTPNSTKPTSIRNV-THSVPTV 582
>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
protein R10F2.6 protein.
Length = 1150
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 339 VQHQQFHRKLTAHHWAQEWRYQQTMFLRLHH 431
+ Q+ + +L A HWA + Y+ F+R+ +
Sbjct: 980 IAQQKDYLQLEARHWATYFEYEMERFIRMEY 1010
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +2
Query: 278 DSSTPAPASIKPTQVQN----LPQRSTPTV---PPEAHSSSLGTGVAIPADD 412
D TP P + P QVQ + PT+ PP A S L VA P DD
Sbjct: 1602 DEKTPEPEPVVPGQVQERIIPIEVEQAPTIPQRPPRAPKSEL-PKVAKPLDD 1652
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +2
Query: 278 DSSTPAPASIKPTQVQN----LPQRSTPTV---PPEAHSSSLGTGVAIPADD 412
D TP P + P QVQ + PT+ PP A S L VA P DD
Sbjct: 1602 DEKTPEPEPVVPGQVQERIIPIEVEQAPTIPQRPPRAPKSEL-PKVAKPLDD 1652
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +2
Query: 278 DSSTPAPASIKPTQVQN----LPQRSTPTV---PPEAHSSSLGTGVAIPADD 412
D TP P + P QVQ + PT+ PP A S L VA P DD
Sbjct: 1602 DEKTPEPEPVVPGQVQERIIPIEVEQAPTIPQRPPRAPKSEL-PKVAKPLDD 1652
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = +2
Query: 176 NPLSHGEHEDIIVSPSGEQ-GFVSIDGKRTYLNLFDSSTPAPASIKPTQVQNLPQRSTPT 352
NP + I SPS S+D K + + + P P Q Q + P
Sbjct: 190 NPATPSSSSQPIPSPSASSIAEESLDDKPSGTKM-PAQPPPQQHPPPPQPQQIMSPMPPQ 248
Query: 353 VPPEAHSSSLGTGVAIPADDVPQ 421
PP ++ + ++ A D P+
Sbjct: 249 APPSQQATPSSSAASVAAPDTPK 271
>AL110484-28|CAB54395.2| 419|Caenorhabditis elegans Hypothetical
protein Y38E10A.4 protein.
Length = 419
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 174 TCCMWTEPPFSPGPCIADTVTSNISPYPGIHGSGA 70
T C W EP P P I S++ PG S A
Sbjct: 284 TSCPWVEPETPPTPVIPSMCNSSMIMAPGTISSPA 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,448,731
Number of Sequences: 27780
Number of extensions: 285802
Number of successful extensions: 1083
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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