Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N10
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    28   0.86 
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   2.0  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   2.6  
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c...    27   2.6  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    26   4.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   6.1  

>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 216 WRIFSLSGTLETVRGRGVVGQEPVLARHAPPSSTAATS 329
           +R+  +SG ++ +    +V QE +LA+H PPS+   +S
Sbjct: 116 FRLPPISGHVQAISNTPIVTQE-MLAQHPPPSTVGGSS 152


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 439 VRFTLERERRDAAIERVPVLTLHSKCTPHMSAWRLQTDVAA 317
           +R T+ER+     +E      L + C P +  W+   D+A+
Sbjct: 426 IRATIERDGITERLEEAGATVLANACGPCIGMWKRTDDIAS 466


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 94  LQSYRSTWAVGNHKIQQYIGGATV*D*RTWVRKRYSSANA 213
           +++ ++T  +G H + QY   AT+ D +  + K    ANA
Sbjct: 778 MRALKNTHLLGRHLVLQYASNATMDDMQHAIEKMAKEANA 817


>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 430 TLERERRDAAIER-VPVLTLHSKCTPHMSAWRLQTDVAAVLEGGA 299
           T E ++ +A     VP++ +HS+C    +AW  + D    L+  A
Sbjct: 148 TTEEQKEEARKTNFVPLVRIHSECYTGETAWSARCDCGEQLDEAA 192


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -1

Query: 395 TCTRPHAPF*MYPTYVRLAPAD*RGCCTGRRCVPRQHGLLPDDAAAP 255
           TC   H    +YP +  L       C +  +C   + G+LPD  + P
Sbjct: 52  TCQNSHGITGIYPLHPSLIQRQIDACLSDIQCRVVKIGMLPDPKSIP 98


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 314 YSSHVSLQAPSGHMWGTFRMEREDGYTFDCR 406
           Y  ++S   P+G +W T  + + D   F  R
Sbjct: 790 YGDYLSASKPNGTLWNTCGLSQNDHVIFSMR 820


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,425
Number of Sequences: 5004
Number of extensions: 43621
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)