Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N10
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418... 58 5e-09
01_06_1237 + 35630146-35630642,35632617-35632950,35633583-35633909 32 0.38
12_02_0198 + 15441840-15442095,15442423-15442442 31 0.88
03_03_0100 + 14411807-14412100 30 1.5
01_01_1153 - 9172529-9172678,9173416-9173642,9174139-9174310 30 1.5
11_03_0013 - 8957277-8957355,8957485-8957591,8957700-8957915,895... 29 2.7
09_01_0049 + 847576-847854 29 2.7
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253... 29 2.7
10_08_0260 - 16290798-16290893,16292284-16292570,16293248-162939... 29 3.5
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754 29 3.5
06_01_1059 + 8512335-8513444 29 3.5
02_04_0470 - 23183925-23184743,23184929-23185153 28 4.7
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 28 4.7
08_01_0688 - 6072815-6073918 28 6.2
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 27 8.2
02_04_0081 + 19541691-19541798,19541865-19542062,19542133-195421... 27 8.2
>05_01_0501 -
4184932-4185048,4185360-4185456,4185537-4185709,
4186225-4186305,4186959-4187072,4187177-4187497
Length = 300
Score = 58.0 bits (134), Expect = 5e-09
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +3
Query: 75 TTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLENLGPQAVQLRERHWRIFSLSGTLETV 254
TT G+RV V Y+ SR +++ Y IR+ N + VQL RHW + +G E +
Sbjct: 170 TTLGIRVQVRSVYIESRSQPLKGQFFFAYRIRITNNSQRPVQLLRRHWIVTDANGRTENI 229
Query: 255 RGRGVVGQEPVL 290
G GVVG++PV+
Sbjct: 230 WGVGVVGEQPVI 241
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 302 TAFQYSSHVSLQAPSGHMWGTFRMERED---GYTFDCRIPPFSLESKPDE 442
T F+YSS L P+G M G F M+ D TF+ I PFSL D+
Sbjct: 245 TGFEYSSACPLNTPNGRMEGDFEMKHIDKAGSSTFNVAIAPFSLSILGDD 294
>01_06_1237 + 35630146-35630642,35632617-35632950,35633583-35633909
Length = 385
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 289 WRGTHRLPVQQPRQSAGAKRTYVGY 363
W G RLP+Q+ ++ A + RTY GY
Sbjct: 100 WHGFFRLPLQEKQKYANSPRTYEGY 124
>12_02_0198 + 15441840-15442095,15442423-15442442
Length = 91
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +3
Query: 288 LARHAPPSSTAATSVCRRQADICGVHLEWSVRTG 389
+A H PPS TAA CRRQ G L+ RTG
Sbjct: 1 MAYHPPPSLTAAAHHCRRQTP-AGAPLQPPGRTG 33
>03_03_0100 + 14411807-14412100
Length = 97
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 310 EGGACRASTGSCPTTPRPRTVSSVPLRENILQWRSRSCTACGP 182
EGG A G CP PR R + P+ + Q R R GP
Sbjct: 44 EGGRGAAVAGECPGAPRKRRAAPGPVSQMQEQHRQRRDFYSGP 86
>01_01_1153 - 9172529-9172678,9173416-9173642,9174139-9174310
Length = 182
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 379 TLHSKCTPHMSAWRLQTDVAAVLEGGACRASTGS 278
TL CT H W L T + V GG A GS
Sbjct: 80 TLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGS 113
>11_03_0013 -
8957277-8957355,8957485-8957591,8957700-8957915,
8958191-8958907,8959483-8959656,8960292-8960546
Length = 515
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 198 QLRERHWRIFSLSGTLETVRGRGVVGQEPVL 290
QL RHW I + V G GV+G+ P+L
Sbjct: 428 QLYSRHWIIRWRDRVVSDVNGEGVIGKYPLL 458
>09_01_0049 + 847576-847854
Length = 92
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -2
Query: 424 ERERRDAAIERVPVLTLHSKCTPHMSAWRLQTDVAAVLEGGACRASTGSCPTTPRPRTVS 245
E RR A ERV + ++ PH ++ +D A+ AC A P P R
Sbjct: 21 EASRRPPAAERVALASMLPAVPPHAASTYAASDSASSAPTDACMAVFP--PPAPAIRARH 78
Query: 244 SVPLRENIL 218
S+P+ +L
Sbjct: 79 SIPVAYRLL 87
>01_05_0618 +
23723441-23723465,23724733-23724788,23725108-23725372,
23725623-23725759,23725849-23725943,23726033-23727057,
23727293-23727453,23727816-23727892,23727978-23728125,
23728364-23728441,23728611-23728838
Length = 764
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 261 RGVVGQEPVLARHAPPSSTAATSVCRRQADICGVHLEW 374
RG V LAR APP S+C+ +A + G W
Sbjct: 398 RGNVRDAVSLARSAPPGPPPLCSICQHKAPVFGKPPRW 435
>10_08_0260 -
16290798-16290893,16292284-16292570,16293248-16293901,
16294999-16295546,16295900-16295961,16296062-16296481
Length = 688
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 280 SCPTTPRPRTVSSVPLRENILQWRSRSCTACG---PKFSNLIQ*RHQYTAEFCDSLLPM* 110
SC T R + + + +N+ Q G P + L Q HQ +AEF + +L +
Sbjct: 521 SCLTPSHRRKCALIEIEKNMRQAGKSLKEYAGIEPPNMAKLNQTEHQKSAEFAEWILQIG 580
Query: 109 NGMTVT 92
NG T++
Sbjct: 581 NGDTIS 586
>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
Length = 203
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 419 RTAGCGNRTCTRPHAPF*MYPTYVRLAPAD-*RGCCTGRRC-VPRQHGLLPDDAAAPHRL 246
R A CG++ TRP P P+Y+ + D C GRR PR LP A HR+
Sbjct: 11 RFANCGSQASTRPPPPPSKSPSYINPSVPDIFIELCIGRRSPAPRLSTTLP--LACCHRV 68
>06_01_1059 + 8512335-8513444
Length = 369
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 314 YSSHVSLQAPSGHMWGTFRMEREDG 388
++SH LQ P+ W FRM R DG
Sbjct: 100 FASH-QLQGPASEWWDHFRMNRADG 123
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 204 RERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPPSSTAATSVCRRQ 344
R+RH +++G LE+ GR G R PP A CRR+
Sbjct: 232 RQRHCCRAAIAGALESATGRPDPGTAVPDPRPPPPPPKARRRPCRRR 278
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 253 CGAAASSGRSPCWRGTHRLPVQQPRQSAGAKR 348
C G P WR +HR + Q AGA R
Sbjct: 99 CPRRTRPGLKPVWRSSHRYTLPQFESKAGATR 130
>08_01_0688 - 6072815-6073918
Length = 367
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 314 YSSHVSLQAPSGHMWGTFRMEREDGY 391
++SH LQ P+ W FRM R +G+
Sbjct: 100 FASH-QLQGPASEWWDHFRMNRAEGH 124
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -2
Query: 388 PVLTLHSKCTPHMSAWRLQTDVAAVLEGGACRASTGSCPTTPRPRTVSSVP 236
P+L LH PH+ R+ + A + A T P P P ++ P
Sbjct: 263 PLLLLHCTLAPHLCVPRVLSPPAPMPSALATHVPTPPAPAPPVPTPLAPTP 313
>02_04_0081 +
19541691-19541798,19541865-19542062,19542133-19542191,
19542274-19542994,19543382-19543723
Length = 475
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = -2
Query: 424 ERERRDAAIERVPVLTLHSKCTPHMSAWRLQTDVA-----AVLEGGACRASTGSCPTTPR 260
E R+AAI +P+ + H +A L+ DVA A + A S G P T R
Sbjct: 27 EAVEREAAINALPLTDVIGPLVDHQTAASLKEDVAREASDAAVAAAAATTSGGKIPKTGR 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,812
Number of Sequences: 37544
Number of extensions: 365871
Number of successful extensions: 1298
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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