Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N10
(578 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009265-1|AAH09265.1| 368|Homo sapiens polymerase (DNA-directe... 193 4e-49
BC000655-1|AAH00655.1| 368|Homo sapiens polymerase (DNA-directe... 193 4e-49
AF179891-1|AAK92018.1| 368|Homo sapiens putative DNA polymerase... 193 4e-49
BC046110-1|AAH46110.1| 471|Homo sapiens F-box protein 3 protein. 48 2e-05
AL136625-1|CAB66560.1| 471|Homo sapiens hypothetical protein pr... 48 2e-05
AK001943-1|BAA91991.1| 471|Homo sapiens protein ( Homo sapiens ... 48 2e-05
AF176702-1|AAF03702.1| 410|Homo sapiens F-box protein FBX3 prot... 48 2e-05
AB209039-1|BAD92276.1| 446|Homo sapiens F-box only protein 3 is... 48 2e-05
BC039291-1|AAH39291.1| 158|Homo sapiens FBXO3 protein protein. 40 0.008
>BC009265-1|AAH09265.1| 368|Homo sapiens polymerase (DNA-directed),
delta interacting protein 2 protein.
Length = 368
Score = 193 bits (470), Expect = 4e-49
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = +3
Query: 6 RETLRAWQKKNHPWLELSDVHRETTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLENLG 185
RETLRAWQ+KNHPWLELSDVHRETTE +RVTVIPFYMG RE+QNS VYWWRYCIRLENL
Sbjct: 214 RETLRAWQEKNHPWLELSDVHRETTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLD 273
Query: 186 PQAVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAP 305
VQLRERHWRIFSLSGTLETVRGRGVVG+EPVL++ P
Sbjct: 274 SDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQP 313
Score = 83.8 bits (198), Expect = 4e-16
Identities = 38/46 (82%), Positives = 38/46 (82%)
Frame = +2
Query: 305 AFQYSSHVSLQAPSGHMWGTFRMEREDGYTFDCRIPPFSLESKPDE 442
AFQYSSHVSLQA SGHMWGTFR ER DG FD RIPPFSLES DE
Sbjct: 314 AFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDE 359
>BC000655-1|AAH00655.1| 368|Homo sapiens polymerase (DNA-directed),
delta interacting protein 2 protein.
Length = 368
Score = 193 bits (470), Expect = 4e-49
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = +3
Query: 6 RETLRAWQKKNHPWLELSDVHRETTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLENLG 185
RETLRAWQ+KNHPWLELSDVHRETTE +RVTVIPFYMG RE+QNS VYWWRYCIRLENL
Sbjct: 214 RETLRAWQEKNHPWLELSDVHRETTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLD 273
Query: 186 PQAVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAP 305
VQLRERHWRIFSLSGTLETVRGRGVVG+EPVL++ P
Sbjct: 274 SDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQP 313
Score = 83.8 bits (198), Expect = 4e-16
Identities = 38/46 (82%), Positives = 38/46 (82%)
Frame = +2
Query: 305 AFQYSSHVSLQAPSGHMWGTFRMEREDGYTFDCRIPPFSLESKPDE 442
AFQYSSHVSLQA SGHMWGTFR ER DG FD RIPPFSLES DE
Sbjct: 314 AFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDE 359
>AF179891-1|AAK92018.1| 368|Homo sapiens putative DNA polymerase
delta p38 subunit protein.
Length = 368
Score = 193 bits (470), Expect = 4e-49
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = +3
Query: 6 RETLRAWQKKNHPWLELSDVHRETTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLENLG 185
RETLRAWQ+KNHPWLELSDVHRETTE +RVTVIPFYMG RE+QNS VYWWRYCIRLENL
Sbjct: 214 RETLRAWQEKNHPWLELSDVHRETTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLD 273
Query: 186 PQAVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAP 305
VQLRERHWRIFSLSGTLETVRGRGVVG+EPVL++ P
Sbjct: 274 SDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQP 313
Score = 83.8 bits (198), Expect = 4e-16
Identities = 38/46 (82%), Positives = 38/46 (82%)
Frame = +2
Query: 305 AFQYSSHVSLQAPSGHMWGTFRMEREDGYTFDCRIPPFSLESKPDE 442
AFQYSSHVSLQA SGHMWGTFR ER DG FD RIPPFSLES DE
Sbjct: 314 AFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDE 359
>BC046110-1|AAH46110.1| 471|Homo sapiens F-box protein 3 protein.
Length = 471
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +3
Query: 75 TTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLEN----LGPQAVQLRERHWRIFSLSGT 242
TT + V+V ++ S + Y++ Y IR+E L +A QL R+WRI + G
Sbjct: 280 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGD 339
Query: 243 LETVRGRGVVGQEPVLA 293
+E V+G GVVG+ P+++
Sbjct: 340 VEEVQGPGVVGEFPIIS 356
>AL136625-1|CAB66560.1| 471|Homo sapiens hypothetical protein
protein.
Length = 471
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +3
Query: 75 TTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLEN----LGPQAVQLRERHWRIFSLSGT 242
TT + V+V ++ S + Y++ Y IR+E L +A QL R+WRI + G
Sbjct: 280 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGD 339
Query: 243 LETVRGRGVVGQEPVLA 293
+E V+G GVVG+ P+++
Sbjct: 340 VEEVQGPGVVGEFPIIS 356
>AK001943-1|BAA91991.1| 471|Homo sapiens protein ( Homo sapiens
cDNA FLJ11081 fis, clone PLACE1005187, weakly similar to
APAG PROTEIN. ).
Length = 471
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +3
Query: 75 TTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLEN----LGPQAVQLRERHWRIFSLSGT 242
TT + V+V ++ S + Y++ Y IR+E L +A QL R+WRI + G
Sbjct: 280 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGD 339
Query: 243 LETVRGRGVVGQEPVLA 293
+E V+G GVVG+ P+++
Sbjct: 340 VEEVQGPGVVGEFPIIS 356
>AF176702-1|AAF03702.1| 410|Homo sapiens F-box protein FBX3
protein.
Length = 410
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +3
Query: 75 TTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLEN----LGPQAVQLRERHWRIFSLSGT 242
TT + V+V ++ S + Y++ Y IR+E L +A QL R+WRI + G
Sbjct: 275 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGD 334
Query: 243 LETVRGRGVVGQEPVLA 293
+E V+G GVVG+ P+++
Sbjct: 335 VEEVQGPGVVGEFPIIS 351
>AB209039-1|BAD92276.1| 446|Homo sapiens F-box only protein 3
isoform 1 variant protein.
Length = 446
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +3
Query: 75 TTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLEN----LGPQAVQLRERHWRIFSLSGT 242
TT + V+V ++ S + Y++ Y IR+E L +A QL R+WRI + G
Sbjct: 255 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGD 314
Query: 243 LETVRGRGVVGQEPVLA 293
+E V+G GVVG+ P+++
Sbjct: 315 VEEVQGPGVVGEFPIIS 331
>BC039291-1|AAH39291.1| 158|Homo sapiens FBXO3 protein protein.
Length = 158
Score = 39.5 bits (88), Expect = 0.008
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 180 LGPQAVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLA 293
L +A QL R+WRI + G +E V+G GVVG+ P+++
Sbjct: 6 LPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIIS 43
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,629,921
Number of Sequences: 237096
Number of extensions: 1873773
Number of successful extensions: 5428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5425
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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