Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N09
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.58 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.58 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   0.77 
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   9.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 137 WTF*IPTMIYK*IHIYN 187
           W F IP M +K + IYN
Sbjct: 661 WNFTIPNMYFKDVFIYN 677


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 137 WTF*IPTMIYK*IHIYN 187
           W F IP M +K + IYN
Sbjct: 661 WNFTIPNMYFKDVFIYN 677


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 460 LFLIICW-PKTSLRLLDVYLEHLQYY 386
           +   ICW P  + RLL VY +   YY
Sbjct: 277 ILFFICWAPFHTQRLLYVYAQESDYY 302


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 SAEF*YMDFLNPNNDI*INSYI*LFYTLLDVQNLSL 225
           S  + Y ++ N NN+   N+Y  L+Y +  ++ + +
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,274
Number of Sequences: 438
Number of extensions: 1755
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)