Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N08
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70035-10|CAA93871.2|  473|Caenorhabditis elegans Hypothetical p...    27   5.5  
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-...    26   9.7  
AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z70035-10|CAA93871.2|  473|Caenorhabditis elegans Hypothetical
           protein R09D1.12 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -3

Query: 227 VTARTYSNSISIRAKIFFLNA*IEYFNYFVFDIANGCILWASIPIIFSNLHCSN 66
           +T+R  +   ++ A++F   +  + F+ F + IANG    AS+P +  +L   N
Sbjct: 273 ITSRERTGGQNVDAEVFDTISTSDLFS-FAYQIANGMEYLASLPCVHRDLALRN 325


>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           1 protein.
          Length = 1073

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 23  NVFLLNKNSEYVFIYLSNEGLRKLSVLKPIKCSRLQYQ 136
           +VFL   +SE  F+   NEG+    V+KP    R +Y+
Sbjct: 25  DVFLKEPSSEPYFLQEGNEGIVIPCVVKPEYFDRQKYE 62


>AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical
           protein F31F4.7 protein.
          Length = 527

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 231 PRYSAYLFKQYLYKGKNI 178
           PRY A  F+ YL+ GK I
Sbjct: 141 PRYDAVFFESYLHTGKAI 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,011,015
Number of Sequences: 27780
Number of extensions: 126363
Number of successful extensions: 247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)