Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N08
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   0.66 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.1  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 143 FVFDIANGCILWASIPIIFSNLHCSN 66
           F FD  N  IL A++  +  N HC N
Sbjct: 391 FNFDDVNFRILGANVKELIRNTHCVN 416


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 44  NSEYVFIYLSNEGLRKLSVLKPIKCSRLQYQ 136
           N+E V     N+ L+K SVL   K  RL+YQ
Sbjct: 417 NNEIVTAQFLNQ-LKKSSVLVHTKNGRLKYQ 446


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 357 YRFKYLVPNELKQGLL 310
           Y +K L+P+ +  GLL
Sbjct: 631 YEWKELIPSHIMAGLL 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,834
Number of Sequences: 438
Number of extensions: 1570
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)