Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N07
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   3.6  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    24   6.3  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    24   8.3  

>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 226 CLN*CHVVNTEKQ 188
           CLN CH VN+E+Q
Sbjct: 12  CLNDCHSVNSEEQ 24


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 309 LGWIIRTFTNDRQTTGHF 362
           + W ++ F N+ QT+ HF
Sbjct: 29  VSWSLKKFNNENQTSEHF 46


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 203 YDMALI*TSRYV*FLEEISNNNIVIYIHKLL*FFGARLD 319
           YD  L+ TS    FL  +  N I +   K L ++G   D
Sbjct: 266 YDKILVVTSHSQDFLNNVCTNIIDLTSKKQLVYYGGNFD 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,411,871
Number of Sequences: 5004
Number of extensions: 26653
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)