Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N07
(363 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66494-2|CAA91257.1| 821|Caenorhabditis elegans Hypothetical pr... 33 0.081
Z68217-9|CAN86607.1| 142|Caenorhabditis elegans Hypothetical pr... 30 0.43
Z68217-8|CAI59117.1| 156|Caenorhabditis elegans Hypothetical pr... 30 0.43
Z93381-5|CAB07608.2| 720|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z83218-2|CAB05687.1| 705|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z83218-4|CAB05690.2| 706|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z81115-3|CAB03293.2| 486|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 26 7.0
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 26 7.0
Z36238-1|CAA85275.2| 400|Caenorhabditis elegans Hypothetical pr... 26 9.3
U23525-5|AAC46568.1| 465|Caenorhabditis elegans Yeast smf (diva... 26 9.3
>Z66494-2|CAA91257.1| 821|Caenorhabditis elegans Hypothetical
protein C34C6.2 protein.
Length = 821
Score = 32.7 bits (71), Expect = 0.081
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 350 CLXVISKCSYNPAELRKIIIT--CVCK*RCYYSIFLLKITHTGMFKLMPCRKYGKTTPST 177
C+ +IS N LR II VC C +S F K T T + KTTP++
Sbjct: 741 CVSMISLTGLNKHHLRIGIIDDETVCTSECPFSPFFAKFTITDGVDFLNNEADSKTTPTS 800
Query: 176 FHFSRY 159
F F +
Sbjct: 801 FDFDDF 806
>Z68217-9|CAN86607.1| 142|Caenorhabditis elegans Hypothetical
protein F58G6.9b protein.
Length = 142
Score = 30.3 bits (65), Expect = 0.43
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 60 NLIDSILHFYNSVICTLLTRNINVYTIYLCL 152
++IDS+ HF+ ++ +L V+++Y+CL
Sbjct: 91 HIIDSLYHFWQLLLAYILMNVYMVFSVYICL 121
>Z68217-8|CAI59117.1| 156|Caenorhabditis elegans Hypothetical
protein F58G6.9a protein.
Length = 156
Score = 30.3 bits (65), Expect = 0.43
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 60 NLIDSILHFYNSVICTLLTRNINVYTIYLCL 152
++IDS+ HF+ ++ +L V+++Y+CL
Sbjct: 105 HIIDSLYHFWQLLLAYILMNVYMVFSVYICL 135
>Z93381-5|CAB07608.2| 720|Caenorhabditis elegans Hypothetical
protein F28G4.5 protein.
Length = 720
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 258 RIITSLFTYTSYYNFSELGWII 323
RI S F+ +YYNFS + W I
Sbjct: 550 RITWSNFSRATYYNFSRIAWAI 571
>Z83218-2|CAB05687.1| 705|Caenorhabditis elegans Hypothetical
protein C31A11.5 protein.
Length = 705
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 270 SLFTYTSYYNFSELGW 317
S+F+ +YYNFS L W
Sbjct: 547 SIFSRATYYNFSRLAW 562
>Z83218-4|CAB05690.2| 706|Caenorhabditis elegans Hypothetical
protein C31A11.7 protein.
Length = 706
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 270 SLFTYTSYYNFSELGWII 323
S+F +YYNFS + W I
Sbjct: 558 SIFARATYYNFSRIAWSI 575
>Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical
protein C47G2.4 protein.
Length = 644
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 190 VFPYLRHGINLNIPVCVI 243
V P L GIN+ +P+C+I
Sbjct: 503 VIPILAKGINIYLPICII 520
>Z81115-3|CAB03293.2| 486|Caenorhabditis elegans Hypothetical
protein T05D4.3 protein.
Length = 486
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 60 NLIDSILHFYNSVICTLLTRNINVYTIYLCLKNISREM 173
NLI ++ +V+ + +T + V+ IYL K I + +
Sbjct: 269 NLIVGCFIYFATVVLSAITLVVTVFNIYLMRKTIQKSL 306
>Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical
protein F09B9.1 protein.
Length = 710
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 270 SLFTYTSYYNFSELGW 317
S+FT ++YNF LGW
Sbjct: 546 SVFTRGTFYNFHRLGW 561
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 270 SLFTYTSYYNFSELGW 317
S FT ++YNF LGW
Sbjct: 535 STFTRATFYNFHRLGW 550
>Z36238-1|CAA85275.2| 400|Caenorhabditis elegans Hypothetical
protein R74.2 protein.
Length = 400
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 245 LEEISNNNIVIYIHKLL*FFGA 310
L E SNNN+ IY + + FFGA
Sbjct: 6 LFEFSNNNLPIYRNTISDFFGA 27
>U23525-5|AAC46568.1| 465|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 2 protein.
Length = 465
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 87 YNSVICTLLTRNINVYTIY 143
Y S+IC ++T INVY I+
Sbjct: 372 YFSIICGIITIGINVYFIF 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,525,980
Number of Sequences: 27780
Number of extensions: 142601
Number of successful extensions: 231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -