Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N04
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    31   0.088
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    28   0.82 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   1.4  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   1.4  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   3.3  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   4.4  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   5.8  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   5.8  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    25   5.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   7.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   7.6  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   7.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   7.6  

>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 31.5 bits (68), Expect = 0.088
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +2

Query: 167 DGVGKDVVLTYKTDILNNGQ--FYTDSNGRQILKRVLNKRPQWNVTLEEPVAGNYYPVVN 340
           +G G++  +   T+  N G   FY DS  +++L     +RP + V +E+P+ GN +    
Sbjct: 208 NGAGREGNMFASTNGDNEGLNLFYYDSTIQRVLTCDC-QRPSYTVYIEDPIIGNGFSSAW 266

Query: 341 EIYIENDDQRFTVLTDR 391
            + I+N D  FT +  R
Sbjct: 267 NL-IKNSDGIFTPVESR 282


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 230 YTDSNGRQILKRVLNKRPQWNVTLEE 307
           Y +S+ R++L+R L K P+  +T+EE
Sbjct: 299 YCNSDLRKLLERCLEKNPEKRITIEE 324


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 14   PYRSQARVKRIENGNIRRTVTNVGDELSIIRTDYLSSNISEIN 142
            PY    R+    +GN  R+  + GD L I+ TD  S  +  IN
Sbjct: 1987 PYEINLRIIERSSGNDWRSSLSPGDSLPILHTDSKSFLLMGIN 2029


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 525 PIATKG*PSTVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVN 370
           P+     PST+ FN SP+P A S+         +  S K A    +++N VN
Sbjct: 313 PVLQPPAPSTLQFNPSPSPAAPSYPP-------VDASVKQAADLDQAINFVN 357


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
 Frame = +2

Query: 245 GRQILKRVLNKRPQWNVTLEEPVAGNYYPVVN----EIYIENDD----QRFTVLTDRAAG 400
           GR +LKR+L K P+  +TL E V  + + +      E +++N D     R  V TD  A 
Sbjct: 382 GRDLLKRLLCKDPEQRITLVE-VKLHPWTLDGLKDPEKWLQNTDPSTVSRVEVSTDEVAS 440

Query: 401 GASLV 415
             SLV
Sbjct: 441 AISLV 445


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 20  RSQARVKRIENGNIRRTVTNVGD-ELSIIRTDYLSSN 127
           R  AR+ R +NG   R +T  GD + S +  DYL ++
Sbjct: 42  RKFARISRGKNGYENRKITEEGDSKSSELNDDYLDAH 78


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/54 (18%), Positives = 28/54 (51%)
 Frame = +2

Query: 140 NWFVRILIDDGVGKDVVLTYKTDILNNGQFYTDSNGRQILKRVLNKRPQWNVTL 301
           NW V+ ++++G G+D+       +    +F  D    +++++ +   P+  ++L
Sbjct: 560 NWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISL 613


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 213 KISVLYVSTTSLPTPSSIKILTNQFI 136
           +I +  VS T++ +P+SI   TNQF+
Sbjct: 723 RIWMCAVSGTNMSSPASINASTNQFV 748


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 218 NGQFYTDSNGRQILKRVLNKRPQWNVTLEEPVAG 319
           N  FY  S+ R I+ + L K P+  +  + P  G
Sbjct: 307 NIPFYVTSDARDIINKFLKKNPKQRLGADGPEKG 340


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 233 TDSNGRQILKRVLNKRPQWNVTLEEPVAGNYYPVVNEIYIENDDQRFTVLTDR 391
           TDS+    + +V+ K  +    LE P++ N   +++   I +D+Q     T+R
Sbjct: 774 TDSSLLTSVVKVICKMLKICKKLECPISQNVIDIIHRASITSDEQTILTFTER 826


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 440  HRRLLHDDAFGVGEALNETVLGQPLVAIGTHVIIQTKND 556
            H + L  D+ G+G A    +L + L  IG H I +T ND
Sbjct: 1312 HMKRLRKDSSGLGRAELVKLLTECLTTIGKH-IEKTVND 1349


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 215 NNGQFYTDSNGRQILKRVLNKRPQ--WNVTLEEPVAGNYYPVVNEIYIENDDQRFTVLT 385
           ++G F      + +++R+L+  P    +V + EPV GN   VV  +  E   + F  ++
Sbjct: 370 SSGLFVDPIASKVVIERLLDSFPAIFQDVKIPEPVVGNALEVVKLLLKETGGKAFVFVS 428


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 368  FDRHSQYIFH*QLDNNSPQRVLPT*HSTEVFY 273
            + RH     H  LD NS   ++ T HS +VF+
Sbjct: 1985 YPRHVPTDSHGSLDENSLGELVTTLHSLDVFF 2016


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,852
Number of Sequences: 5004
Number of extensions: 47448
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)