Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N04
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 132 1e-31
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 124 4e-29
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 69 3e-12
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 30 1.1
09_02_0621 - 11307417-11307813,11308078-11308246,11308372-113084... 30 1.5
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 30 1.5
05_07_0238 + 28597399-28598286 30 1.5
02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110 28 5.9
04_01_0502 - 6587068-6587964 27 7.7
02_04_0620 - 24491055-24491710,24491794-24491986,24492165-244939... 27 7.7
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 27 7.7
>11_05_0014 + 18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 132 bits (320), Expect = 1e-31
Identities = 57/114 (50%), Positives = 82/114 (71%)
Frame = +2
Query: 155 ILIDDGVGKDVVLTYKTDILNNGQFYTDSNGRQILKRVLNKRPQWNVTLEEPVAGNYYPV 334
I +DDG GK++ T++ N FYTDS+GR +KR+ + R +W + + +P+AGNYYPV
Sbjct: 686 IPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPV 745
Query: 335 VNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNET 496
IY+E+ + ++L DR+ GGAS+ +G+I+LM+HRRLLHDD GV EALNET
Sbjct: 746 NLGIYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNET 799
>10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 124 bits (300), Expect = 4e-29
Identities = 57/112 (50%), Positives = 75/112 (66%)
Frame = +2
Query: 164 DDGVGKDVVLTYKTDILNNGQFYTDSNGRQILKRVLNKRPQWNVTLEEPVAGNYYPVVNE 343
DD +GK+VV T++ N FYTDSNGR L+RV N R W++ L +PVAGNYYPV
Sbjct: 681 DDDIGKEVVTRLTTNMATNKIFYTDSNGRDFLERVRNHRDDWDLNLSQPVAGNYYPVNQG 740
Query: 344 IYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETV 499
IY+ + +VL D A G +S+ +G+I++M+HRRL DD GVGE LNE V
Sbjct: 741 IYVADGKYELSVLVDHAVGASSIQDGQIEVMLHRRLSADDGRGVGEPLNEVV 792
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 68.9 bits (161), Expect = 3e-12
Identities = 36/104 (34%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = +2
Query: 179 KDVVLTYKTDILNNGQFYTDSNGRQILKRVLNKRPQWNVTLEEPVAGNYYPVVNEIYIEN 358
K++++ +KTDI N G FY+D NG Q +++R ++ + P+ GNYYP+ + ++++
Sbjct: 882 KELIVRFKTDIDNQGVFYSDLNGFQ-----MSRRQTYD---KIPLQGNYYPMPSLAFLQD 933
Query: 359 D-DQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEAL 487
RF+V + ++ G ASL G +++M+ RRL DD G+G+ +
Sbjct: 934 SLGNRFSVHSKQSLGAASLKNGWLEIMLDRRLTQDDGRGLGQGV 977
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +2
Query: 74 TNVGDELSIIRTDYLSSNISEINWFVRILID------DGVGKDVVLTYKTDILNNGQFYT 235
T+V E+S ++ +ISE+ +L D K++ +KTD++ + Y
Sbjct: 507 TSVAQEISRLKAPVSEQSISEMKSQTGLLYDWIQETLSDCRKELFSCHKTDMIADITTYQ 566
Query: 236 DSNGRQILKRVLNKRPQWNV 295
+N ++L + L P WN+
Sbjct: 567 FNNIGKVLAQFLQDLPGWNI 586
>09_02_0621 -
11307417-11307813,11308078-11308246,11308372-11308440,
11308635-11308761,11308985-11309253,11309356-11309522,
11309730-11309801,11310205-11310329
Length = 464
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 374 TVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQPLVAIGT-HVIIQTK 550
T ++ AAG ++ E R + D F G L ETV G+P + G HV+ + K
Sbjct: 317 THISVTAAGTIGYIDPEYYFS-SRLTMRSDVFSFGVVLLETVTGEPPIVPGVGHVVQRVK 375
Query: 551 NDI 559
+
Sbjct: 376 QKV 378
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 218 NGQFYTDSNGRQILKRVLNKRPQWNVTLE-EPVAG-NYYPVVNEI-YIENDDQRFTVLTD 388
NG+++T+ RQ+ + + QW V +E + ++G N+ V +I Y E + R T D
Sbjct: 573 NGKYHTNFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKKILYDETEVVRMTNAKD 632
Query: 389 RAA 397
+ A
Sbjct: 633 KRA 635
>05_07_0238 + 28597399-28598286
Length = 295
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -1
Query: 501 STVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVN 370
STV+ + S +P++SS ++ CT+S +PS++ A P A + N
Sbjct: 33 STVTTSPS-SPSSSSTGSVDCTLSLGTPSSRRAEPVAAAAPAAN 75
>02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110
Length = 97
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 483 ASPTPNASSWS---NLLCTISWISPSTKDAPPAARSVNTVNL 367
+ P P AS WS LC + WI+P +AP + + V++
Sbjct: 54 SQPPPPASRWSLISTFLCLLKWIAP--LEAPHQIQRIEQVDI 93
>04_01_0502 - 6587068-6587964
Length = 298
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 59 IRRTVTNVGDELSIIRTDYLSSNISEINWFVRILIDDGVGKDVVLTYKTDILNN 220
+R + + DE +R LSS ++ IN R+L G DVV+ Y I+ N
Sbjct: 117 VRELTSIMSDEC--LREAELSSEVTRINTAPRVLPCHLEGNDVVIQYSPTIVVN 168
>02_04_0620 -
24491055-24491710,24491794-24491986,24492165-24493991,
24494245-24494304,24494808-24494916,24496393-24496522,
24498740-24498848
Length = 1027
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 501 STVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAAR 388
ST S NA +S+ + C++SW +++ A P R
Sbjct: 803 STTSKNAKAVSRSSAIEAVACSLSWDDTTSESALPGTR 840
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 477 PTPNASSWSNLLCTISWISPSTK 409
PT S W CT SW+S ++K
Sbjct: 478 PTMKTSDWYTKSCTYSWVSLNSK 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,902
Number of Sequences: 37544
Number of extensions: 292923
Number of successful extensions: 856
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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