Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N04
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    27   0.17 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.23 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 457 RRRIWSRRGVERDRARSTFSCYRNTCNYSNKE*YY 561
           + R   RR  ER +     S   N+CNYSN   YY
Sbjct: 286 KERSRDRRERERSKEPKIISSLSNSCNYSNN--YY 318


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +2

Query: 323 YYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVL 502
           ++P  N   +E DDQ+  ++    +  AS V   I       +  D  F +    N T+ 
Sbjct: 223 FWPSFNSAALEGDDQQRAIINTLLSISASCV---IAFATSALVSKDSKFNMVHIQNSTLA 279

Query: 503 GQPLVAIGT 529
           G   VAIGT
Sbjct: 280 GG--VAIGT 286


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 228 NCPLFKISV-LYVSTTSLPTPSSIKILTNQFISLM 127
           N P+ K  V ++++    P   ++K+L N+F+S++
Sbjct: 120 NLPILKDGVQIFIA----PNNGAVKVLANEFLSIL 150


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 228 NCPLFKISV-LYVSTTSLPTPSSIKILTNQFISLM 127
           N P+ K  V ++++    P   ++K+L N+F+S++
Sbjct: 158 NLPILKDGVQIFIA----PNNGAVKVLANEFLSIL 188


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 472 SRRGVERDRARSTFSCYRNTCNYSN 546
           SR   ER+R++ T     N  NY N
Sbjct: 289 SRDRTERERSKETKIISSNNYNYKN 313


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 472 SRRGVERDRARSTFSCYRNTCNYSN 546
           SR   ER+R++ T     N  NY N
Sbjct: 300 SRDRTERERSKETKIISSNNYNYKN 324


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 260 KRVLNKRPQWNVTLEEPVAGNYYPV 334
           KR+LN+      TLE PVA    P+
Sbjct: 56  KRLLNELLSSYNTLERPVANESEPL 80


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 260 KRVLNKRPQWNVTLEEPVAGNYYPV 334
           KR+LN+      TLE PVA    P+
Sbjct: 56  KRLLNELLSSYNTLERPVANESEPL 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,261
Number of Sequences: 438
Number of extensions: 3238
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)