Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N02
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    92   4e-20
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    29   0.41 
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.41 
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.2  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    26   2.2  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   3.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   5.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   6.7  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.9  
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   8.9  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 91.9 bits (218), Expect = 4e-20
 Identities = 34/64 (53%), Positives = 46/64 (71%)
 Frame = +3

Query: 135 RFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEWVDKWDNQRAEGTF 314
           RFPN NQT++C+QSY+D+ RC K +G+ + PC  F   Y+S+CP EWV++WD QR  GTF
Sbjct: 20  RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79

Query: 315 AGRI 326
              I
Sbjct: 80  PAPI 83


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  EFEEKALFTLSKM-PEMIKSAADIKTAPFDPRFPNQNQTR 161
           + +   L+TLSK  P ++K + D   APF+    N N  R
Sbjct: 43  DIDTSVLYTLSKRKPALVKRSTDASYAPFNVTCSNDNLLR 82


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  EFEEKALFTLSKM-PEMIKSAADIKTAPFDPRFPNQNQTR 161
           + +   L+TLSK  P ++K + D   APF+    N N  R
Sbjct: 43  DIDTSVLYTLSKRKPALVKRSTDASYAPFNVTCSNDNLLR 82


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 262 VPTSGSTNGTTSARREPSPAGFKLFQS 342
           +P+ G +N ++S R     AGF LF+S
Sbjct: 194 LPSGGLSNLSSSLRSSSKSAGFSLFES 220


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 158 EVLLSELFRLPSMPEGPRQEVRPVLLFPAGLQVHVSQRVGRQMGQPARG-GNLRRQDLNY 334
           EVL   L RLP + + P +E+ P+L     L +  S      + +  +    +  Q+ N 
Sbjct: 51  EVLNLFLTRLPLLAQAPEKELEPILAVFINL-IQESAAFEDHVSKFCQALEQIADQNNNL 109

Query: 335 SKALL*FITIIFN 373
           + A+L  ++I+FN
Sbjct: 110 TPAILSVLSILFN 122


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 96  KSAADIKTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRG-KKYDPCYYFQRVYKSMCPNE 272
           ++ ++ +++  DP  P +  +  C  +Y +    +K+RG KKY P +    +Y     N+
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIYGFKKANQ 242

Query: 273 W--VDKWD 290
           +  VD+++
Sbjct: 243 FYTVDQYN 250


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = -1

Query: 309 FPPRAGCP--ICR----PTRWDTWTCRPAGNSSTGRTSCRGPS 199
           F    GC   ICR    P+++  ++CR A NSS   TS  G S
Sbjct: 397 FLTNGGCYSYICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQS 439


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 188 PSMPEGPRQEVRPVLLFPAGLQVHVSQRVGRQMGQPARGGNLRRQDLNYSKALL 349
           PSM  GP+ EV P     A L    +  V  Q     +G N+ ++  NY+  +L
Sbjct: 457 PSMSNGPKSEVSPSQSQQAPLIQSSTSPVSLQFPPEVQGSNVDKR--NYALNVL 508


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 397 LNHIARPIVKNNRNKLQECFGII*ILPAKVPSAR 296
           L+H+ + I+   R KL++  G +     KVPSA+
Sbjct: 609 LDHVVQAIIHYERFKLRKYLGNMSEFVKKVPSAK 642


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 222 DPCYYFQRVYKSMCPNEWVDKWDNQ 296
           DP Y       ++ PNEWV +W  Q
Sbjct: 379 DPRYIKLFGSNAILPNEWVTEWVEQ 403


>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 206 PRQEVRPVLLFPAGLQVHVSQRVGRQMGQPA 298
           P+ E+RP L FP  L   +  R+ +   Q A
Sbjct: 15  PKDELRPWLSFPKTLDTSIRARLQKMPPQQA 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,621
Number of Sequences: 5004
Number of extensions: 35301
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)