Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N02
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 91 3e-19
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 91 4e-19
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 73 1e-13
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 56 9e-09
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 30 0.93
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 28 2.9
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 28 2.9
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 28 3.8
04_03_1019 + 21759368-21760546 27 8.7
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 91.5 bits (217), Expect = 3e-19
Identities = 34/75 (45%), Positives = 50/75 (66%)
Frame = +3
Query: 96 KSAADIKTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEW 275
K I+TAP D RFP NQTR+C+ Y+++HRC +G+ C F + Y+S+CP+EW
Sbjct: 179 KPEIKIETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEW 238
Query: 276 VDKWDNQRAEGTFAG 320
+++W+ QR GTF G
Sbjct: 239 IERWNEQRENGTFPG 253
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 91.1 bits (216), Expect = 4e-19
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +3
Query: 96 KSAADIKTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEW 275
K I+TAP D RFP NQTR+C+ Y+++HRC +G+ C F + Y+S+CP EW
Sbjct: 93 KPEIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEW 152
Query: 276 VDKWDNQRAEGTFAG 320
V++W+ QR GTF G
Sbjct: 153 VERWNEQRENGTFPG 167
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 72.5 bits (170), Expect = 1e-13
Identities = 27/56 (48%), Positives = 38/56 (67%)
Frame = +3
Query: 108 DIKTAPFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEW 275
+IKTAP D RFP NQTR+C+ Y+++HRC +G+ C F + Y+S+CP EW
Sbjct: 20 EIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 56.4 bits (130), Expect = 9e-09
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 195 CQKVRGKKYDPCYYFQRVYKSMCPNEWVDKWDNQRAEGTFAG 320
C + +G+ D C + + Y+S+CP EW+++W QRA GTFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 125 FRPKVP*PK-PDEVLLSELFRLPSMPEGPRQEVRPVL 232
F+P+ P K P + + FR+P + E P QE+ P++
Sbjct: 647 FKPRSPEKKIPIDPSVRNFFRVPQLGEQPNQEIEPLV 683
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +3
Query: 3 TRKSECGAAIFHWIEFE---EKALFTLSKMPEMIKSAADIKTAP 125
TRKS CG W FE K + L P+++K I P
Sbjct: 76 TRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEP 119
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +3
Query: 3 TRKSECGAAIFHWIEFE---EKALFTLSKMPEMIKSAADIKTAP 125
TRKS CG W FE K + L P+++K I P
Sbjct: 73 TRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEP 116
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 265 PTSGSTNGTTSARREPSPAGFKLFQSTLVIYYDYF*R*VEQC 390
PTS NG SA+ + SP+G FQ+ L I D+ + +C
Sbjct: 687 PTSTGFNGVPSAQIQTSPSGL-TFQNMLDICSDFSRLTISEC 727
>04_03_1019 + 21759368-21760546
Length = 392
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 262 VPTSGSTNGTTSARREPSPA 321
+PTSG+T+ +TS PSP+
Sbjct: 252 LPTSGATSSSTSGHSVPSPS 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,565,965
Number of Sequences: 37544
Number of extensions: 241954
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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