Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N02
(438 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 87 5e-18
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 30 0.85
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 30 0.85
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 30 0.85
AC024839-3|AAF60829.1| 308|Caenorhabditis elegans T box family ... 30 0.85
AC024839-2|AAF60830.1| 308|Caenorhabditis elegans Hypothetical ... 30 0.85
Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 29 2.0
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 29 2.0
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 29 2.0
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 28 2.6
AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical ... 28 3.4
AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical ... 27 4.5
Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF039051-9|AAB94260.1| 169|Caenorhabditis elegans Hypothetical ... 27 7.9
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 87.0 bits (206), Expect = 5e-18
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = +3
Query: 120 APFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEWVDKWDNQR 299
AP+D RFP + R C+ Y+DFHRC ++ G+ Y PC +FQ VYK CP W ++WD
Sbjct: 51 APYDARFPQVRKQRQCFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELL 110
Query: 300 AEGTFAGR 323
+EG F +
Sbjct: 111 SEGRFPAK 118
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 29.9 bits (64), Expect = 0.85
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 330 FKSCRRRFPPRAGCPICRPTRWDTWTCR 247
F + +++FP R G C P W W+C+
Sbjct: 52 FVTHKQQFPCREGDNKCTPDEWGRWSCK 79
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 29.9 bits (64), Expect = 0.85
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 330 FKSCRRRFPPRAGCPICRPTRWDTWTCR 247
F + +++FP R G C P W W+C+
Sbjct: 52 FVTHKQQFPCREGDNKCTPDEWGRWSCK 79
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 29.9 bits (64), Expect = 0.85
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 330 FKSCRRRFPPRAGCPICRPTRWDTWTCR 247
F + +++FP R G C P W W+C+
Sbjct: 47 FVTHKQQFPCREGDNKCTPDEWGRWSCK 74
>AC024839-3|AAF60829.1| 308|Caenorhabditis elegans T box family
protein 30 protein.
Length = 308
Score = 29.9 bits (64), Expect = 0.85
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 123 PFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCP-NEWVDK 284
P P + +QNQ +Y + Y F D YYF ++S P N + D+
Sbjct: 249 PSSPLYSSQNQYQYPFHPYSPFDSSIPYPYSPMDYSYYFNPTFQSFSPENVYFDE 303
>AC024839-2|AAF60830.1| 308|Caenorhabditis elegans Hypothetical
protein Y59E9AR.5 protein.
Length = 308
Score = 29.9 bits (64), Expect = 0.85
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 123 PFDPRFPNQNQTRYCYQSYLDFHRCQKVRGKKYDPCYYFQRVYKSMCP-NEWVDK 284
P P + +QNQ +Y + Y F D YYF ++S P N + D+
Sbjct: 249 PSSPLYSSQNQYQYPFHPYSPFDSSIPYPYSPMDYSYYFNPTFQSFSPENVYFDE 303
>Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical
protein C54G4.4 protein.
Length = 868
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 131 PKVP*PKPDEVLLSELFRLPSMPEGPRQEVRPVLL----FPAGLQVHVSQRVGRQMGQPA 298
P +P +PD V+ + P++ EV P LL P G +HV+ +GRQMG+P+
Sbjct: 735 PSIPPQRPDSVI----YYAPTVAH---MEVPPHLLQLQQLPNG-NIHVTLPIGRQMGRPS 786
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 28.7 bits (61), Expect = 2.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = +3
Query: 69 TLSKMPEM--IKSAADIKTAPFDP---RFPNQNQTRYCYQSYLDFHRCQ-----KVRGKK 218
T+ P+M I D K +DP + N ++CYQ+ +C K G
Sbjct: 173 TIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDKCWGSG 232
Query: 219 YDPCYYFQRVYKSMCP 266
+ C QRVY+S+CP
Sbjct: 233 DNDC---QRVYRSVCP 245
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 28.7 bits (61), Expect = 2.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = +3
Query: 69 TLSKMPEM--IKSAADIKTAPFDP---RFPNQNQTRYCYQSYLDFHRCQ-----KVRGKK 218
T+ P+M I D K +DP + N ++CYQ+ +C K G
Sbjct: 173 TIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDKCWGSG 232
Query: 219 YDPCYYFQRVYKSMCP 266
+ C QRVY+S+CP
Sbjct: 233 DNDC---QRVYRSVCP 245
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 28.7 bits (61), Expect = 2.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = +3
Query: 69 TLSKMPEM--IKSAADIKTAPFDP---RFPNQNQTRYCYQSYLDFHRCQ-----KVRGKK 218
T+ P+M I D K +DP + N ++CYQ+ +C K G
Sbjct: 224 TIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDKCWGSG 283
Query: 219 YDPCYYFQRVYKSMCP 266
+ C QRVY+S+CP
Sbjct: 284 DNDC---QRVYRSVCP 296
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 185 LPSMPEGPRQEVRPVLLFPAGLQVHVSQRVGRQMGQP 295
+P MP GP Q + L AG + ++ QMG P
Sbjct: 628 MPGMPHGPPQPPQNPALMVAGNRAGSAEAAAAQMGNP 664
>AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical
protein B0212.3 protein.
Length = 672
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 177 YLDFHRCQKVRGKKYDPCYYFQRVYKSMCPNEWVDKWDNQRAE 305
+L + ++ G+K+ Y +R +K + PN + KW N + E
Sbjct: 277 WLVHNEFKRQEGRKFSKSGYAKRFHKKLAPN--MSKWTNYKIE 317
>AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical
protein Y57A10A.7 protein.
Length = 732
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 186 FHRCQKVRGKKYDPCYYFQRVYKSMCPNEWVDKWDN 293
F+R ++ G YY+ R ++ + PN + KWDN
Sbjct: 29 FNRFAELDGAGLSHIYYYIRFHEHIAPN--IAKWDN 62
>Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical
protein T16G1.2 protein.
Length = 407
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 188 PSMPEGPRQEVRPVLLFPA 244
P++ EGP+ EV P L+FP+
Sbjct: 25 PALLEGPQNEVVPSLIFPS 43
>AF039051-9|AAB94260.1| 169|Caenorhabditis elegans Hypothetical
protein C14C6.2 protein.
Length = 169
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 291 CPICRPTRWDTWTCRPAGNSSTGRTSCRG 205
C C + TC+ N STGR+ C G
Sbjct: 116 CGYCSSSATTAGTCQDKINPSTGRSDCPG 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,788,050
Number of Sequences: 27780
Number of extensions: 202679
Number of successful extensions: 556
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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