Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_N01
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 46 3e-06
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 42 6e-05
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 40 1e-04
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 37 0.001
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 33 0.026
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 30 0.14
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 6.8
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 6.8
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 6.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.8
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 24 9.0
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 46.0 bits (104), Expect = 3e-06
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -3
Query: 432 DIGIITPYIAQVKYLRVLFDAMGLPLPKIGSVEEFQGQERPIIIISTVRTTE 277
DI ++TPY AQV +R L G+ + ++GSV++ QG+E+ II S VR+ +
Sbjct: 548 DIAVVTPYNAQVALIRQLLKEKGIEV-EMGSVDKVQGREKEAIIFSLVRSND 598
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 41.5 bits (93), Expect = 6e-05
Identities = 17/47 (36%), Positives = 34/47 (72%)
Frame = -2
Query: 253 KNTLGFVKNSKRMNVALTRAQVVVFLFCDPDLLCTDPLWKKVINNAV 113
K+ +GF+++ +R+NVALTRA+ + + + + L TD LW ++++A+
Sbjct: 1588 KHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLVDDAL 1634
Score = 37.1 bits (82), Expect = 0.001
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = -3
Query: 429 IGIITPYIAQVKYLR----VLFDAMGLPLPKIGSVEEFQGQERPIIIISTVRTTEAH 271
IG+ITPY +Q+ LR V + + I +V+ FQGQE+ II S V++ H
Sbjct: 1533 IGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKH 1589
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 40.3 bits (90), Expect = 1e-04
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Frame = -3
Query: 429 IGIITPYIAQVKYLRVLFDAM-GLPLPK---IGSVEEFQGQERPIIIISTVRTT 280
IG++TPY +QV+ LR F G + K I +V+ FQGQE+ III S VR++
Sbjct: 1671 IGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSS 1724
Score = 30.3 bits (65), Expect = 0.14
Identities = 13/43 (30%), Positives = 29/43 (67%)
Frame = -2
Query: 244 LGFVKNSKRMNVALTRAQVVVFLFCDPDLLCTDPLWKKVINNA 116
+GF+++ +R+NVALTRA+ +++ + L + ++ +I +A
Sbjct: 1729 IGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDA 1771
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -2
Query: 244 LGFVKNSKRMNVALTRAQVVVFLFCDPDLLCTDPLW 137
+GFV + +R+NVALTRA+ V + +P +L LW
Sbjct: 778 IGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALW 813
Score = 36.3 bits (80), Expect = 0.002
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -3
Query: 429 IGIITPYIAQVKYLRVLFDAMG------LPLPKIGSVEEFQGQERPIIIISTVRTTE 277
IGI+TPY Q Y+ G ++ SV+ FQG+E+ II+S VR++E
Sbjct: 718 IGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSE 774
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 32.7 bits (71), Expect = 0.026
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = -2
Query: 253 KNTLGFVKNSKRMNVALTRAQVVVFLFCDPDLLC-TDPLWKKVINNAVMEDKYVG 92
+ +GF+ + R+ V+L+RA+ +F+F + L+ ++PLW IN + ++ G
Sbjct: 913 RTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESNPLWWDAINTLMNDETIQG 967
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 30.3 bits (65), Expect = 0.14
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 163 DLLCTDPLWKKVINNAVMEDKYVGCDLP 80
+++C + LW+ + NAV+E +Y D+P
Sbjct: 161 NVVCVEWLWQSIQRNAVLEPQYFQLDMP 188
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 253 KNTLG-FVKNSKRMNVALTRAQVVVFLF 173
KN +G +++ R+NVAL+RA+V +F
Sbjct: 1288 KNLVGELLRDWHRLNVALSRAKVKCIMF 1315
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.6 bits (51), Expect = 6.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +2
Query: 14 LVSSFFFFFLTN--DLYLFI*NIIW*ITSYVFIFHYSIVNNLFP*RVCTQK----VWITK 175
++ +F TN DL+LF N + + FI + +NN P ++ + VW T+
Sbjct: 3498 ILKDYFSSIFTNYSDLWLFRKNFSYQYACFSFITYILSINNRIPAKLVFSRDSGGVWTTE 3557
Query: 176 *KDHYLSSS*CY 211
+SS+ Y
Sbjct: 3558 ALPSMVSSTPVY 3569
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 157 LCTDPLWKKVINNAVMEDKYVGCDL 83
+C +W + + EDKYVG D+
Sbjct: 768 ICGMQVWHPWLQSYTFEDKYVGRDI 792
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 405 AQVKYLRVLFDAMGLPLPKIGSVEEFQGQERPIIIISTVRTTE 277
A V LR L DA+ ++E+F GQ++ ++ S++ + E
Sbjct: 1558 AVVSALRPLDDAVASYTNSEMNIEQFDGQKKKCVLASSLPSEE 1600
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 220 RMNVALTRAQVVVFLFCDPDLLCTD 146
RM ++L RA LFC PDLL D
Sbjct: 360 RMRLSLARA-----LFCQPDLLLLD 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,065
Number of Sequences: 5004
Number of extensions: 31000
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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