Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_N01
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ...    38   0.004
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    36   0.013
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    36   0.013
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    36   0.017
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    33   0.070
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    33   0.070
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    31   0.28 
U32305-4|AAK18861.1|  139|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    28   3.5  
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
            protein Y80D3A.2 protein.
          Length = 1467

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
 Frame = -3

Query: 429  IGIITPYIAQVKYLRVLFDA-------MGLPLPKIGSVEEFQGQERPIIIISTVRTTEAH 271
            I I+T Y  Q + +R +F         +G+P  K+ +V+++QGQ+   II+S V+T    
Sbjct: 1226 ISILTTYNGQAQLIRDVFQRRCDTNPLIGMPA-KVSTVDKYQGQQNDFIILSLVKTRNIG 1284

Query: 270  LSEDHKKTL*ALSKTQ 223
               D ++ + ALS+ +
Sbjct: 1285 HIRDVRRLVVALSRAR 1300


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = -2

Query: 244 LGFVKNSKRMNVALTRAQVVVFLFCDPDLLCTDPLWKKVINN 119
           +GF+ + +R+NVA+TRA+  + L  +  +L    LW ++IN+
Sbjct: 824 IGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINH 865


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = -2

Query: 244 LGFVKNSKRMNVALTRAQVVVFLFCDPDLLCTDPLWKKVINN 119
           +GF+ + +R+NVA+TRA+  + L  +  +L    LW ++IN+
Sbjct: 824 IGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINH 865



 Score = 33.9 bits (74), Expect = 0.053
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -3

Query: 435 NDIGIITPYIAQVKYLRVLFDAMGLPLPK------IGSVEEFQGQERPIIIISTVRTTE 277
           + IG+ITPY  Q  ++       G    K      I SV+ FQG+E+  II++ VR+ +
Sbjct: 762 HQIGVITPYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSND 820


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical protein
            C44H9.4 protein.
          Length = 1099

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 21/72 (29%), Positives = 39/72 (54%)
 Frame = -3

Query: 435  NDIGIITPYIAQVKYLRVLFDAMGLPLPKIGSVEEFQGQERPIIIISTVRTTEAHLSEDH 256
            +DIGII+ Y AQ     +L DA+     K G+++ FQG ER ++I+       +   ++ 
Sbjct: 913  SDIGIISFYKAQTS---LLADALKKTDVKCGTIDAFQGTEREVMIVCCTNKNPSLFMQEG 969

Query: 255  KKTL*ALSKTQK 220
             +   A+S+ ++
Sbjct: 970  TRVNVAMSRARQ 981


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
            C05C10.2b protein.
          Length = 1553

 Score = 33.5 bits (73), Expect = 0.070
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 435  NDIGIITPYIAQVKYLRVLFDAMGLPLPKIGSVEEFQGQERPIIII 298
            +DIG+I+ Y AQ   L       G+   K G+V+ FQG E+ III+
Sbjct: 1368 SDIGVISFYSAQTSILTEHLRGSGV---KCGTVDAFQGSEKEIIIM 1410



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 238  FVKNSKRMNVALTRAQVVVFLFCDPDLLCTDPLWKKVIN 122
            F++ S R+NVA++RA+ V  +    D L     W  ++N
Sbjct: 1420 FMQLSNRLNVAMSRAKQVTIIIGHLDGLRRANYWSTIVN 1458


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
            C05C10.2a protein.
          Length = 1551

 Score = 33.5 bits (73), Expect = 0.070
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 435  NDIGIITPYIAQVKYLRVLFDAMGLPLPKIGSVEEFQGQERPIIII 298
            +DIG+I+ Y AQ   L       G+   K G+V+ FQG E+ III+
Sbjct: 1368 SDIGVISFYSAQTSILTEHLRGSGV---KCGTVDAFQGSEKEIIIM 1410



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 238  FVKNSKRMNVALTRAQVVVFLFCDPDLLCTDPLWKKVIN 122
            F++ S R+NVA++RA+ V  +    D L     W  ++N
Sbjct: 1420 FMQLSNRLNVAMSRAKQVTIIIGHLDGLRRANYWSTIVN 1458


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -2

Query: 253  KNT-LGFVKNSKRMNVALTRAQVVVFLFCD-PDLLCTDPLWKKVINN 119
            +NT +GF+  + R+ VALTRAQ  +++  +   ++    LW K++NN
Sbjct: 1443 ENTGIGFLAVANRICVALTRAQHGMYIIGNGAYIMNNSELWNKIVNN 1489


>U32305-4|AAK18861.1|  139|Caenorhabditis elegans Hypothetical
           protein B0336.13 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 223 KRMNVALTRAQVVVFLFCDPDLLC---TDPLWKKVINNAVMEDKYVGCDLPYDIL 68
           K MN  ++R       FC   LL     D +W  ++NN  ++D     D P D L
Sbjct: 43  KSMNKQISRLPKEKMNFCATQLLTYRYCDNVWTFILNNVTLKDPQRSFDEPIDKL 97


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 253 KNTLGFVKNSKRMNVALTRAQ 191
           + T+GFV   +R+NV +TRA+
Sbjct: 474 RKTMGFVSELRRLNVVITRAK 494


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical
           protein F40F4.6 protein.
          Length = 2214

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 412 IHCTG*IFKGTV*CYGTAFAENWVGRRIPRSRKTNNYY 299
           IH  G  F G +   G   AEN + R IP + + N  Y
Sbjct: 242 IHAQGLDFPGQIQAIGFTGAENHISRYIPMTTRFNCTY 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,145,006
Number of Sequences: 27780
Number of extensions: 170707
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)