Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M24
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   179   8e-46
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical p...    27   5.4  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   5.4  
AF016655-4|AAY55854.1|  144|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    26   9.4  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  179 bits (435), Expect = 8e-46
 Identities = 82/113 (72%), Positives = 97/113 (85%)
 Frame = +1

Query: 34  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 213
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLRKSEI
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60

Query: 214 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEATA 372
           EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII ++P  +A
Sbjct: 61  EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVPSESA 113


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +1

Query: 91  LVMKSGKYCLGYKQTLKTLRQGKAKLVI 174
           +VMK+G+Y L Y+Q LK+L    AKLVI
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVI 27


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
           protein F23D12.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 189 ASSEEVGDRILCSPSQNRCPPLQ 257
           +S+E+VG  +LC P Q   PPL+
Sbjct: 344 SSTEDVGITVLCVPHQELIPPLE 366


>Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical
           protein C01G10.15 protein.
          Length = 100

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 21  NCYHNGCSKETEKDHRVY*FPSGS-GYEVWQILLG 122
           N Y+NGCS  +  +   Y +PS S GY  + +  G
Sbjct: 64  NGYNNGCSGCSNNNGYTYYYPSNSNGYTTYYLTYG 98


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 217 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 342
           +Y LLA  G+     + +ELGTA   YY +    +T  G  D
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEGRDD 291


>AF016655-4|AAY55854.1|  144|Caenorhabditis elegans Hypothetical
           protein C17F4.11 protein.
          Length = 144

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 136 LKTLRQGKAKLVIIARNAPPLRKSEIEYYALLAKT-GVHHYSGNNIELGTACGKYYRVCT 312
           L+T       L II     P+    +  Y +  KT GV HY GN  +L +   K+ R   
Sbjct: 15  LRTYENSNQLLQIIVNARKPVL---VFGYPVSNKTKGVVHYEGNEFDLRSFLKKFNRQME 71

Query: 313 LAITDPGDSDIITTLPEA 366
           +   +   +D + TL  A
Sbjct: 72  IFFKESESNDWLFTLYNA 89


>Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical
           protein F56C4.2 protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 292 FRKQYRAQYCFHCSGGHLFWLGEHNILSPT 203
           FR  YR  YCF+ S  +   +  H + +PT
Sbjct: 79  FRFYYRRSYCFYNSRCYSLTMSCHPVATPT 108


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 186 CASSEEVGDRILCSPSQNRCPPLQWKQ 266
           C + EE  D   CSP  N+C  ++  Q
Sbjct: 475 CQNEEECVDHSYCSPETNKCECMKASQ 501


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 186 CASSEEVGDRILCSPSQNRCPPLQWKQ 266
           C + EE  D   CSP  N+C  ++  Q
Sbjct: 475 CQNEEECVDHSYCSPETNKCECMKASQ 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,288,031
Number of Sequences: 27780
Number of extensions: 189930
Number of successful extensions: 490
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)