Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M22
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   2.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.8  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    26   3.7  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    26   4.9  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   8.6  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 271 ISSGLCDVARTSATMTSQSRPRFKFSGLPFMPTRQCSL 158
           +S+   D+A  S++ TS+  P F +   P +PT   +L
Sbjct: 140 LSNSHIDIAALSSSKTSEPTPPFSYVQTPCIPTPSSAL 177


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
 Frame = +3

Query: 159 NEHCLVGMKG-NPENLNRGLDCDVIVAEVRATSHKPDEIYGI------IERLSPGTRKIE 317
           +E C    +G  P N N  +DCD +   ++      DEI         +++ +P    + 
Sbjct: 663 DEICKQSTEGCYPFNSNHTIDCDSLQNVIKMLESSIDEISSASYDKDELDKETPSFEAVM 722

Query: 318 LFGRTHNVQPNWITLGNQVEGVRLVDPELIAAFKKRYPD 434
           +F +  +    ++    Q +G+  V P  +  FK  +P+
Sbjct: 723 IFSQI-SFLCGFLNCFIQKKGIHNVTPNNLVIFKNLFPE 760


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 6   RLWVTGRAMELGRECLKLWGYERVDELIWVKTNQLQRIIRTGRTGH---WLN-HGNEHCL 173
           R  + G   E+ +   KLW  +   ELIW++  ++  I +  R  H   W N H N    
Sbjct: 44  RACMKGIVYEVYKNQPKLWLQQ---ELIWLRRKRIHPIPKARRNNHVGRWANRHSNVSSS 100

Query: 174 VGMKG 188
            G +G
Sbjct: 101 SGSRG 105


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 225 VIVAEVRATSHKPDE-IYGIIERLSPGTRKIELFG 326
           + +   +  ++ PDE IY  ++++ PGTR + + G
Sbjct: 321 ITIVPFQMMTYLPDEDIYKPVDKVEPGTRTLNISG 355


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 383 NSFNLISQCYPVWLNIVCTTKEFYLSSPR 297
           N F L+ +C+  WLN     K   L  PR
Sbjct: 22  NGFPLMKRCHDNWLNATQILKIAELDKPR 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,352
Number of Sequences: 5004
Number of extensions: 55354
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)