Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M22
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 231 3e-61
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 109 2e-24
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 107 5e-24
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 105 2e-23
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284... 32 0.31
07_03_1495 + 26983415-26984797 31 0.94
04_03_0733 + 19116771-19116957,19117733-19117858,19117946-191180... 29 3.8
01_03_0177 + 13470784-13471609,13472263-13472423,13472575-134727... 28 5.0
>02_05_0276 + 27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 231 bits (565), Expect = 3e-61
Identities = 103/142 (72%), Positives = 119/142 (83%)
Frame = +3
Query: 9 LWVTGRAMELGRECLKLWGYERVDELIWVKTNQLQRIIRTGRTGHWLNHGNEHCLVGMKG 188
LWVTGRAMELGRECL+LWGY+RV+E+IWVKTNQLQRIIRTGRTGHWLNH EHCLVG+KG
Sbjct: 579 LWVTGRAMELGRECLELWGYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKG 638
Query: 189 NPENLNRGLDCDVIVAEVRATSHKPDEIYGIIERLSPGTRKIELFGRTHNVQPNWITLGN 368
NP +NR +D DVIVAEVR TS KPDE+Y ++ER+SP TRK+ELF R HN W++LGN
Sbjct: 639 NP-LVNRNIDTDVIVAEVRETSRKPDEMYPMLERISPRTRKLELFARMHNAHAGWLSLGN 697
Query: 369 QVEGVRLVDPELIAAFKKRYPD 434
Q+ GVRLVD L A +K YPD
Sbjct: 698 QLNGVRLVDEGLRARYKAAYPD 719
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 109 bits (261), Expect = 2e-24
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 10/129 (7%)
Frame = +3
Query: 9 LWV-TGRAMELGRECLKLWGYERVDELIWVKTNQLQRIIRTGRTGHW-LNHGNEHCLVGM 182
LWV G +E GR+CLK WG+ R +++ WVKTN+ H L H EHCL+G+
Sbjct: 566 LWVGDGVGLEQGRQCLKKWGFRRCEDVCWVKTNKKNATPSLRHDSHTILQHSKEHCLMGI 625
Query: 183 KGNPENLNRG------LDCDVIVAE--VRATSHKPDEIYGIIERLSPGTRKIELFGRTHN 338
KG G +D D+I+AE ++ KP+++Y IIE + G R++ELFG HN
Sbjct: 626 KGTVRRSTDGHVIHANIDTDIIIAEEPTDGSTKKPEDMYRIIEHFALGKRRLELFGEDHN 685
Query: 339 VQPNWITLG 365
++P W+TLG
Sbjct: 686 IRPGWLTLG 694
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 107 bits (258), Expect = 5e-24
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 10/129 (7%)
Frame = +3
Query: 9 LWV-TGRAMELGRECLKLWGYERVDELIWVKTNQLQRIIRTGRTGHW-LNHGNEHCLVGM 182
LWV G +E GR+CLK WG+ R +++ WVKTN+ H L H EHCL+G+
Sbjct: 569 LWVGDGVGLEQGRQCLKKWGFRRCEDVCWVKTNKKSATPSLRHDSHTILQHSKEHCLMGI 628
Query: 183 KGNPENLNRG------LDCDVIVAE--VRATSHKPDEIYGIIERLSPGTRKIELFGRTHN 338
KG G +D D+I+A+ ++ KP+++Y IIE + G R++ELFG HN
Sbjct: 629 KGTVRRSTDGHVIHANIDTDIIIADEPTDGSTKKPEDMYRIIEHFALGKRRLELFGEDHN 688
Query: 339 VQPNWITLG 365
++P W+TLG
Sbjct: 689 IRPGWLTLG 697
>10_08_0198 + 15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 105 bits (253), Expect = 2e-23
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 10/129 (7%)
Frame = +3
Query: 9 LWV-TGRAMELGRECLKLWGYERVDELIWVKTNQLQRIIRTGRTGHWL-NHGNEHCLVGM 182
LWV G +E GR+CLK WG+ R +++ W+KTN+ + L H EHCL+G+
Sbjct: 773 LWVGDGVGLEQGRQCLKKWGFRRCEDICWIKTNKKNATPGLRHDSNTLFQHSKEHCLMGI 832
Query: 183 KGNPENLNRG------LDCDVIVAE--VRATSHKPDEIYGIIERLSPGTRKIELFGRTHN 338
KG G +D D+I+AE ++ KP+++Y IIE + G R++ELFG HN
Sbjct: 833 KGTVRRSTDGHIIHANIDTDIIIAEEPTDGSTKKPEDMYRIIEHFALGRRRLELFGEDHN 892
Query: 339 VQPNWITLG 365
++P W+TLG
Sbjct: 893 IRPGWLTLG 901
>02_01_0391 +
2838471-2838794,2838892-2839028,2841155-2841631,
2841719-2841999,2843009-2843051,2844094-2844148,
2845771-2845824,2846282-2846314,2846574-2846621,
2846885-2846950,2847286-2847426
Length = 552
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +3
Query: 24 RAMELGRECLKLWGYERVDELIWVKTNQLQRIIRTGRTGHWLNHGNEHCLVGMKGNPENL 203
RA L R+ +K+ G E D++IW+ + L+R++R+ + L H + CL + + N+
Sbjct: 173 RANPLMRK-VKIMGRE--DKIIWIPNDNLRRLVRSLNKTYALLHAKKKCLSSLTSS--NV 227
Query: 204 NRGLDCDVIVAEVRATSHKPDE 269
G D ++ V + +E
Sbjct: 228 LVGEDGSAVIQGVIEIPYSEEE 249
>07_03_1495 + 26983415-26984797
Length = 460
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 210 GLDCDVIVAEVRATSHKPDEIYGIIERLSPGTRKIELF 323
G D E+ A ++ D + G++E+L PGT + E+F
Sbjct: 192 GFSVDERSGEIEALCYESDALEGMVEKLVPGTVESEVF 229
>04_03_0733 +
19116771-19116957,19117733-19117858,19117946-19118061,
19118395-19118483,19118692-19118743,19119361-19119829,
19120985-19121367,19121450-19122132,19122561-19123152,
19123255-19123638,19124106-19124114
Length = 1029
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 204 NRGLDCDVIVAEVRATSHKPDEIYGIIE 287
NRG D +V+ E R+ KP E+Y I++
Sbjct: 61 NRGFDINVLHKEARSRWLKPSEVYYILQ 88
>01_03_0177 +
13470784-13471609,13472263-13472423,13472575-13472785,
13473092-13473161,13489257-13489410,13489532-13489777
Length = 555
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 15 VTGRAMELGRECLKLWGYERVDELI 89
++GR+ EL R +LW ER DEL+
Sbjct: 464 LSGRSYELRRYAWQLWKEERCDELV 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,624
Number of Sequences: 37544
Number of extensions: 378458
Number of successful extensions: 1041
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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