Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M22
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z92809-2|CAB07271.1|  628|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF125960-3|AAD14737.1|  446|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 276 GIIERLSPGTRKIELFGRTHNVQPNWITLGNQVEGVRLVDPELIAAF--KKRYPD 434
           GI +R+         FGR  ++ PN+  +    EG  L    LI  +   +RYPD
Sbjct: 161 GISKRIDLSYPTSNFFGRKFSLIPNFFGISMSPEGQHLNSSNLIVLYFRAERYPD 215


>Z92809-2|CAB07271.1|  628|Caenorhabditis elegans Hypothetical
           protein R17.2 protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 24/78 (30%), Positives = 33/78 (42%)
 Frame = +3

Query: 117 IIRTGRTGHWLNHGNEHCLVGMKGNPENLNRGLDCDVIVAEVRATSHKPDEIYGIIERLS 296
           +++  RTG  L  GN H    +  NP      +D  V V +    + K  EIY     L+
Sbjct: 454 VLKDSRTGKLLVCGNTH----LHHNP------IDEHVKVLQALTCTRKLLEIYEETRELN 503

Query: 297 PGTRKIELFGRTHNVQPN 350
            G   + LFG   N  PN
Sbjct: 504 KGIEVLVLFGGDFNSTPN 521


>AF125960-3|AAD14737.1|  446|Caenorhabditis elegans Hypothetical
           protein T12B3.1 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 12  WVTGRAMELGRECLKLWGYERVDELIWVKTNQLQRIIRTGRTGHWLNHGNEHCLVGMKGN 191
           W+T   + + R  L++  ++ +  +   KTN +Q +I    +G     G+ +   G   +
Sbjct: 73  WITSDILAMAR--LQVEHFDSLGIVEKFKTNGIQSVINLQESGEHSFCGSGNLTSGFSYD 130

Query: 192 PENLNR 209
           PENL R
Sbjct: 131 PENLMR 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,902
Number of Sequences: 27780
Number of extensions: 317089
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)